Rv1816 Transcriptional regulator, TetR family

Rv1816 (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0173 with residual 0.41 and bicluster_0443 with residual 0.45.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 11.00 and 12,000.00 for bicluster_0173 and 0.00 and 0.40 for bicluster_0443 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, cytoplasm, RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 111 - 120 of 143
Gene Target Differential Expression Distance Expression pvalue Type
Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj
No -50 -0.03 0.968321 Primary.TSS
putative phosphoglycerate mutase family protein
No -127 0.08 0.931127 Primary.TSS
Carbonic anhydrase (EC 4.2.1.1)
No -43 0.18 0.507296 Antisense.TSS
No -103 -0.44 0.392738 Primary.TSS
PROBABLE CONSERVED MEMBRANE PROTEIN
No -104 0.15 0.782421 CDS
Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Induced -88 1.33 0.0348216 CDS
POSSIBLE TRANSMEMBRANE PROTEIN
No 51 -0.32 0.686892 CDS
MCE-associated transmembrane protein
No 36 0.15 0.802855 CDS
MCE-family protein Mce1D
No -87 0.22 0.647 CDS
FadE30
No 47 0.52 0.298804 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.07 U
D3I 3 3 3.83 12.26 I
D3U 3 3 3.83 11.96 U
D5I 9 5 6.00 12.69 I
D5U 17 5 6.00 12.43 U
D7I 18 7 8.14 12.30 I
D7U 19 7 8.14 11.73 U
D14I 4 14 15.63 13.41 I
D14U 4 14 15.63 12.52 U
D17I 3 17 19.15 13.71 I
D17U 3 17 19.15 12.66 U
D21I 4 21 23.23 13.23 I
D21U 4 21 23.23 12.39 U
D24I 3 24 26.60 13.29 I
D24U 3 24 26.60 12.22 U
D28I 4 28 30.61 12.79 I
D28U 4 28 30.61 12.00 U