Rv1816 Transcriptional regulator, TetR family

Rv1816 (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0173 with residual 0.41 and bicluster_0443 with residual 0.45.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 11.00 and 12,000.00 for bicluster_0173 and 0.00 and 0.40 for bicluster_0443 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, cytoplasm, RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 91 - 100 of 143
Gene Target Differential Expression Distance Expression pvalue Type
FIG146085: 3'-to-5' oligoribonuclease A, Bacillus type
No 24 -0.11 0.863111 CDS
ElaA protein
No -20 0.21 0.616973 Primary.TSS
Transcriptional regulatory protein glnR
No -100 0.42 0.616931 CDS
LSU ribosomal protein L19p
No -81 -0.04 0.957738 Primary.TSS
16S rRNA processing protein RimM
No 6 -0.18 0.752477 CDS
Nitrogen regulatory protein P-II
No -80 0.2 0.815182 Primary.TSS
Ammonium transporter
No -80 -0.16 0.871706 Internal.TSS
No 63 0.18 0.80061 Primary.TSS
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)
No 8 -0.6 0.255193 Antisense.TSS
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)
No 58 -0.6 0.255193 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D7U 19 7 8.14 11.73 U
D3U 3 3 3.83 11.96 U
D28U 4 28 30.61 12.00 U
D0U 27 0 0.00 12.07 U
D24U 3 24 26.60 12.22 U
D3I 3 3 3.83 12.26 I
D7I 18 7 8.14 12.30 I
D21U 4 21 23.23 12.39 U
D5U 17 5 6.00 12.43 U
D14U 4 14 15.63 12.52 U
D17U 3 17 19.15 12.66 U
D5I 9 5 6.00 12.69 I
D28I 4 28 30.61 12.79 I
D21I 4 21 23.23 13.23 I
D24I 3 24 26.60 13.29 I
D14I 4 14 15.63 13.41 I
D17I 3 17 19.15 13.71 I