Rv3160c Transcriptional regulator, TetR family

Rv3160c (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0078 with residual 0.48 and bicluster_0239 with residual 0.41.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 360.00 and 14,000.00 for bicluster_0078 and 2,700.00 and 6,000.00 for bicluster_0239 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 11 - 14 of 14
Gene Target Differential Expression Distance Expression pvalue Type
POSSIBLE TRANSMEMBRANE PROTEIN
No -18 -0.03 0.999974 CDS
Histone protein Lsr2
No 43 0.22 0.999974 Primary.TSS
ESX-1 secretion system protein (Rv3616c)
No -134 -0.02 0.999974 Primary.TSS
Putative uncharacterized protein BCG_3873
No -39 0.04 0.999974 Primary.TSS
not assigned to any KEGG Pathway.
GO:0010033

response to organic substance

response to organic substance

Details: 
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus.
GO Category: 
biological_process
8
Total items in this category:  
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.68 U
D3I 3 3 3.83 11.95 I
D3U 3 3 3.83 11.24 U
D5I 9 5 6.00 12.43 I
D5U 17 5 6.00 12.15 U
D7I 18 7 8.14 11.82 I
D7U 19 7 8.14 11.50 U
D14I 4 14 15.63 12.07 I
D14U 4 14 15.63 11.46 U
D17I 3 17 19.15 11.96 I
D17U 3 17 19.15 11.45 U
D21I 4 21 23.23 11.83 I
D21U 4 21 23.23 11.46 U
D24I 3 24 26.60 11.45 I
D24U 3 24 26.60 11.18 U
D28I 4 28 30.61 11.35 I
D28U 4 28 30.61 11.03 U