Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_0209(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_0209
Module neighborhood information for RSP_0209
|Gene||Common Name||Description||Module membership|
|RSP_0134||RSP_0134||hypothetical protein (NCBI)||103, 183|
|RSP_0209||RSP_0209||possible prophage Lp3 protein 18 (NCBI)||103, 138|
|RSP_0234||tlpL||TlpL, putative cytoplasmic chemoreceptor (NCBI)||138, 235|
|RSP_0297||RSP_0297||ABC branched chain amino acid transporter, ATPase subunit (NCBI)||103, 304|
|RSP_0298||RSP_0298||ABC branched chain amino acid transporter, ATPase subunit (NCBI)||103, 313|
|RSP_0299||RSP_0299||ABC branched chain amino acid transporter, inner membrane subunit (NCBI)||103, 313|
|RSP_0300||RSP_0300||ABC branched chain amino acid transporter, inner membrane subunit (NCBI)||103, 147|
|RSP_0477||RSP_0477||hypothetical protein (NCBI)||97, 103|
|RSP_0607||RSP_0607||sigma 24 (NCBI)||77, 103|
|RSP_0615||RSP_0615||Putative oxidoreductase (NCBI)||138, 193|
|RSP_0617||RSP_0617||hypothetical protein (NCBI)||103, 325|
|RSP_1171||radC||DNA repair protein (NCBI)||138, 150|
|RSP_1294||RSP_1294||possible 2-oxoisovalerate dehydrogenase; E1 component, alpha and beta subunit (NCBI)||103, 217|
|RSP_1305||RSP_1305||putative flagellar hook-associated protein (NCBI)||138, 246|
|RSP_1504||RSP_1504||hypothetical protein (NCBI)||138, 183|
|RSP_1774||RSP_1774||Putative glucose dehydrogenase B (NCBI)||138, 282|
|RSP_1781||RSP_1781||putative membrane-anchored oxidoreductase, similar to L-sorbosone dehydrogenase (NCBI)||138, 191|
|RSP_1933||RSP_1933||Outer membrane protein, OmpA/MotB family (NCBI)||103, 280|
|RSP_1957||RSP_1957||hypothetical protein (NCBI)||138, 235|
|RSP_2019||RSP_2019||hypothetical protein (NCBI)||103, 120|
|RSP_2022||RSP_2022||Cytochrome b/diheme cytochrome c hybrid protein (NCBI)||103, 229|
|RSP_2026||RSP_2026||transcriptional regulator, AraC family (NCBI)||103, 176|
|RSP_2037||RSP_2037||hypothetical protein (NCBI)||138, 147|
|RSP_2040||RSP_2040||possible Transposase fragment (NCBI)||138, 235|
|RSP_2055||RSP_2055||hypothetical protein (NCBI)||103, 379|
|RSP_2062||RSP_2062||hypothetical protein (NCBI)||138, 191|
|RSP_2064||RSP_2064||hypothetical protein (NCBI)||138, 303|
|RSP_2065||RSP_2065||hypothetical protein (NCBI)||138, 191|
|RSP_2066||RSP_2066||hypothetical protein (NCBI)||138, 303|
|RSP_2072||RSP_2072||Putative Phage-related Holin protein (NCBI)||138, 282|
|RSP_2105||RSP_2105||hypothetical protein (NCBI)||103, 325|
|RSP_2150||RSP_2150||predicted Glycosyl transferase, family 2 (NCBI)||138, 249|
|RSP_2151||yohD||putative DedA family, membrane protein (NCBI)||138, 249|
|RSP_2152||RSP_2152||putative ceramide glucosyltransferase (NCBI)||138, 249|
|RSP_2385||RSP_2385||hypothetical protein (NCBI)||103, 124|
|RSP_2677||RSP_2677||Putative Mg++ transport associated protein, MgtC (NCBI)||138, 141|
|RSP_2792||RSP_2792||putative monooxygenase alpha subunit (NCBI)||77, 103|
|RSP_2793||RSP_2793||Putative reductase component of monooxygenase (NCBI)||103, 313|
|RSP_2794||RSP_2794||Putative monooxygenase beta subunit (NCBI)||103, 193|
|RSP_2795||RSP_2795||Putative regulatory protein of multicomponent monooxygenase (NCBI)||103, 193|
|RSP_2796||RSP_2796||hypothetical protein (NCBI)||77, 103|
|RSP_2798||groEL3||Putative chaperonin groEL (NCBI)||77, 103|
|RSP_3201||RSP_3201||putative oxidoreductase (NCBI)||138, 235|
|RSP_3230||RSP_3230||hypothetical protein (NCBI)||103, 279|
|RSP_3334||RSP_3334||HyuE hydantoin racemase (NCBI)||44, 103|
|RSP_3360||RSP_3360||Adenine specific DNA methyltransferase, D12 class (NCBI)||103, 342|
|RSP_3413||RSP_3413||ABC Fe+3-siderophore transporter, ATPase subunit (NCBI)||138, 253|
|RSP_3415||RSP_3415||ABC Fe+3-siderophore transporter, inner membrane subunit (NCBI)||74, 138|
|RSP_3497||RSP_3497||Caspase-1, p20 (NCBI)||103, 168|
|RSP_3498||RSP_3498||Antifreeze protein, type I (NCBI)||103, 370|
|RSP_3541||RSP_3541||hypothetical protein (NCBI)||103, 242|
|RSP_3576||RSP_3576||hypothetical protein (NCBI)||103, 249|
|RSP_3763||RSP_3763||hypothetical protein (NCBI)||137, 138|
|RSP_3791||RSP_3791||hypothetical protein (NCBI)||137, 138|
|RSP_3811||RSP_3811||hypothetical protein (NCBI)||138, 246|
|RSP_3812||RSP_3812||recombinase (NCBI)||103, 189|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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