Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1220(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1220
Module neighborhood information for RSP_1220
|Gene||Common Name||Description||Module membership|
|RSP_0351||RSP_0351||D-threo-aldose 1-dehydrogenase (NCBI)||158, 216|
|RSP_0408||RSP_0408||hypothetical protein (NCBI)||134, 216|
|RSP_0419||RSP_0419||hypothetical protein (NCBI)||10, 308|
|RSP_0424||RSP_0424||hypothetical protein (NCBI)||216, 285|
|RSP_0559||msrA||Peptide methionine sulfoxide reductase (NCBI)||134, 216|
|RSP_0608||RSP_0608||hypothetical protein (NCBI)||146, 216|
|RSP_0674||RSP_0674||Putative HolB DNA polymerase III delta prime subunit (NCBI)||10, 36|
|RSP_0715||RSP_0715||Ribonuclease T2 (NCBI)||10, 35|
|RSP_0716||RSP_0716||NADPH/quinone reductase and related Zn-dependent oxidoreductases (NCBI)||132, 216|
|RSP_0765||RSP_0765||SAM-dependent methyltransferase (NCBI)||10, 176|
|RSP_0766||RSP_0766||hypothetical protein (NCBI)||10, 56|
|RSP_0825||ppnk||probable inorganic polyphosphate/ATP-NAD kinase (NCBI)||1, 10|
|RSP_0845||RSP_0845||hypothetical protein (NCBI)||4, 10|
|RSP_0846||ribA||GTP cyclohydrolase II (NCBI)||4, 10|
|RSP_0847||RSP_0847||two component transcriptional regulator, winged helix family (NCBI)||10, 287|
|RSP_0897||RSP_0897||Glutathione S-transferase (NCBI)||10, 20|
|RSP_1006||RSP_1006||hypothetical protein (NCBI)||7, 10|
|RSP_1007||RSP_1007||hypothetical protein (NCBI)||10, 127|
|RSP_1058||RSP_1058||hypothetical transmemebrane protein (NCBI)||134, 216|
|RSP_1076||sohB||Peptidase family S49 (NCBI)||216, 366|
|RSP_1077||RSP_1077||transcriptional regulator, LysR family (NCBI)||216, 249|
|RSP_1078||fdsG||NAD-dependent formate dehydrogenase, gamma subunit (24 kDa) (NCBI)||216, 239|
|RSP_1079||fdsB||NAD dependent formate dehydrogenase, beta subunit (51 kDa) (NCBI)||216, 239|
|RSP_1080||fdsA||NAD-dependent formate dehydrogenase, alpha subunit (NCBI)||216, 239|
|RSP_1081||fdsC||formate dehydrogenase chain C (NCBI)||216, 239|
|RSP_1082||fdsD||NAD-dependent formate dehydrogenase, delta subunit (NCBI)||216, 239|
|RSP_1204||RSP_1204||ABC multidrug efflux pump, fused ATPase and inner membrane subunits (NCBI)||216, 237|
|RSP_1220||hrcA||heat-inducible transcription repressor HrcA (NCBI)||10, 216|
|RSP_1384||RSP_1384||hypothetical protein (NCBI)||10, 323|
|RSP_1408||clpB||Chaperone ClpB (NCBI)||132, 216|
|RSP_1743||RSP_1743||ATPase, AAA family (NCBI)||216, 237|
|RSP_1794||RSP_1794||putative lytic transglycosylase (NCBI)||10, 250|
|RSP_1834||RSP_1834||hypothetical protein (NCBI)||10, 185|
|RSP_1868||RSP_1868||serine-pyruvate aminotransferase (NCBI)||10, 127|
|RSP_1873||RSP_1873||hypothetical protein (NCBI)||35, 216|
|RSP_1891||RSP_1891||Zinc-binding dehydrogenase (NCBI)||10, 158|
|RSP_2119||RSP_2119||hypothetical protein (NCBI)||10, 381|
|RSP_2120||RSP_2120||putative D-lactate dehydrogenase (cytochrome), FAD/FMN-containing oxidoreductase (NCBI)||10, 127|
|RSP_2121||RSP_2121||hypothetical protein (NCBI)||216, 366|
|RSP_2142||RSP_2142||NifS-related protein (NCBI)||4, 10|
|RSP_2196||RSP_2196||enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase (NCBI)||174, 216|
|RSP_2197||RSP_2197||Acetoacetyl-CoA thiolase (NCBI)||174, 216|
|RSP_2282||chrA||Chromate efflux pump, ChrA (NCBI)||10, 107|
|RSP_2505||creA||possible CreA protein (NCBI)||10, 237|
|RSP_2551||exoO||Glycosyl transferase, family 2 (NCBI)||10, 100|
|RSP_2618||RSP_2618||Putative hemolysin (NCBI)||10, 341|
|RSP_2638||RSP_2638||putative sodium/calcium exchanger (NCBI)||134, 216|
|RSP_2640||RSP_2640||hypothetical protein (NCBI)||134, 216|
|RSP_2825||cobK||Putative precorrin-6x reductase (NCBI)||1, 10|
|RSP_2966||uvrA||ABC excinuclease subunit A (NCBI)||134, 216|
|RSP_3377||RSP_3377||Glutathione S-transferase family protein (NCBI)||176, 216|
|RSP_3602||RSP_3602||ABC efflux transporter, ATPase subunit (NCBI)||134, 216|
|RSP_3603||RSP_3603||Possible ABC efflux tranporter, fused inner membrane domains (NCBI)||134, 216|
|RSP_3606||RSP_3606||Sigma54-2 (RNA polymerase sigma-54 factor) (NCBI)||10, 162|
|RSP_3686||RSP_3686||transcriptional regulator, LacI family (NCBI)||171, 216|
|RSP_3836||RSP_3836||Putative metal-dependent hydrolase (NCBI)||10, 329|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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