Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_0688(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_0688
Module neighborhood information for RSP_0688
|Gene||Common Name||Description||Module membership|
|RSP_0167||RSP_0167||hypothetical protein (NCBI)||52, 262|
|RSP_0196||clpX||ATP-dependent protease Clp, ATPase subunit (NCBI)||48, 52|
|RSP_0335||RSP_0335||Probable dicyclicGMP cyclasephosphodiesterase (NCBI)||52, 162|
|RSP_0379||RSP_0379||putative aminotransferase protein (NCBI)||16, 52|
|RSP_0382||RSP_0382||poly-beta-hydroxybutyrate polymerase (NCBI)||118, 200|
|RSP_0383||RSP_0383||hypothetical protein (NCBI)||200, 204|
|RSP_0394||RSP_0394||hypothetical protein (NCBI)||200, 349|
|RSP_0453||RSP_0453||hypothetical protein (NCBI)||52, 81|
|RSP_0550||RSP_0550||putative D-alanyl-D-alanine carboxypeptidase (NCBI)||25, 52|
|RSP_0600||RSP_0600||hypothetical protein (NCBI)||200, 350|
|RSP_0688||RSP_0688||Probable penicillin-binding protein (NCBI)||52, 200|
|RSP_0698||fnrL||Crp-Fnr regulatory protein (FnrL) (NCBI)||200, 262|
|RSP_0798||RSP_0798||Neutral zinc metallopeptidases (NCBI)||52, 81|
|RSP_0837||RSP_0837||hypothetical protein (NCBI)||52, 349|
|RSP_0886||TyrB||Aminotransferase (NCBI)||52, 207|
|RSP_0959||RSP_0959||ATPase (NCBI)||174, 200|
|RSP_1022||RSP_1022||conserved hypothetical protein (possibly transmembrane) (NCBI)||200, 323|
|RSP_1023||RSP_1023||hypothetical protein (NCBI)||185, 200|
|RSP_1024||RSP_1024||Putative MoxR family protein (NCBI)||171, 200|
|RSP_1029||RSP_1029||possible Histidine triad (HIT) protein (NCBI)||127, 200|
|RSP_1109||cysK||Cysteine synthase (NCBI)||112, 200|
|RSP_1167||argJ||Glutamate N-acetyltransferase (NCBI)||51, 52|
|RSP_1199||RSP_1199||secreted conserved hypothetical protein (NCBI)||200, 262|
|RSP_1397||RSP_1397||Glutathione S-transferase (NCBI)||52, 81|
|RSP_1561||RSP_1561||AMP-forming acyl-CoA synthetase/ligase (NCBI)||16, 52|
|RSP_1756||panB||probable 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI)||52, 207|
|RSP_1890||RSP_1890||Transcriptional regulator, LysR family (NCBI)||46, 52|
|RSP_2001||trpD||Anthranilate phosphoribosyltransferase (NCBI)||52, 207|
|RSP_2002||trpG||Anthranilate synthase component II (NCBI)||52, 207|
|RSP_2008||argD||Acetylornithine Aminotransferase class-III (NCBI)||52, 195|
|RSP_2181||proX||ABC glycine betaine/L-proline transporter, periplasmic substrate-binding subunit (NCBI)||52, 70|
|RSP_2202||RSP_2202||hypothetical protein (NCBI)||52, 162|
|RSP_2203||RSP_2203||hypothetical protein (NCBI)||16, 52|
|RSP_2242||hisF||Imidazole glycerol phosphate synthase subunit (NCBI)||51, 52|
|RSP_2261||ydjI||Antifreeze protein, type I (NCBI)||64, 200|
|RSP_2344||fabI1||enoyl-acyl carrier protein reductase (NCBI)||72, 200|
|RSP_2410||rpoH1||sigma factor RpoH1 (Sigma-32 group, heat shock) (NCBI)||200, 287|
|RSP_2431||RSP_2431||putative O-acetylhomoserine sulfhydrylase (NCBI)||52, 195|
|RSP_2550||exoK||endo-beta-1,3-1,4-glycanase protein (NCBI)||200, 262|
|RSP_2561||exoP||putative succinoglycan biosynthesis transport protein ExoP (NCBI)||114, 200|
|RSP_2562||exoM||succinoglycan biosynthesis protein exoM (NCBI)||114, 200|
|RSP_2563||exoA||Glycosyl transferase, family 2 (NCBI)||114, 200|
|RSP_2564||exoL||glycosyltransferase, Succinoglycan biosynthesis protein exoL (NCBI)||114, 200|
|RSP_2565||ugpG||UDPG-pyrophosphorylase (NCBI)||200, 223|
|RSP_2576||adhI||Alcohol dehydrogenase class III (NCBI)||52, 278|
|RSP_2639||RSP_2639||Putative arginine-tRNA protein transferase (NCBI)||46, 200|
|RSP_2806||lon||Probable ATP-dependent protease La protein (NCBI)||3, 200|
|RSP_2962||RSP_2962||Methylmalonic acid semialdehyde dehydrogenase (NCBI)||52, 262|
|RSP_2986||RSP_2986||ArgE/DapE/Acy1 family protein (NCBI)||52, 71|
|RSP_3229||RSP_3229||Membrane-bound lytic murein transglycosylase B (NCBI)||200, 262|
|RSP_3597||RSP_3597||CorC/Hlyc family protein with CBS domains (NCBI)||182, 200|
|RSP_3598||RSP_3598||Protein of unknown function UPF0054 (NCBI)||182, 200|
|RSP_3599||RSP_3599||hypothetical protein (NCBI)||56, 200|
|RSP_3831||cox15||putative cytochrome oxidase assembly factor (NCBI)||52, 195|
|RSP_3832||cxp||putative thermostable carboxypeptidase 1 (NCBI)||1, 52|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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