Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_0383(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_0383
Module neighborhood information for RSP_0383
|Gene||Common Name||Description||Module membership|
|RSP_0016||RSP_0016||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||204, 223|
|RSP_0179||RSP_0179||ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components TauA (NCBI)||70, 204|
|RSP_0343||RSP_0343||putative ABC sugar transporter, inner membrane subunit (NCBI)||57, 204|
|RSP_0344||RSP_0344||putative ABC sugar transporter, fused ATPase subunits (NCBI)||57, 204|
|RSP_0345||RSP_0345||Possible ABC transporter, periplasmic binding protein (NCBI)||70, 204|
|RSP_0346||RSP_0346||ABC transporter, substrate binding protein (NCBI)||70, 204|
|RSP_0347||RSP_0347||ABC transporter, inner membrane subunit (NCBI)||57, 204|
|RSP_0348||RSP_0348||ABC transporter, inner membrane subunit (NCBI)||57, 204|
|RSP_0382||RSP_0382||poly-beta-hydroxybutyrate polymerase (NCBI)||118, 200|
|RSP_0383||RSP_0383||hypothetical protein (NCBI)||200, 204|
|RSP_0394||RSP_0394||hypothetical protein (NCBI)||200, 349|
|RSP_0600||RSP_0600||hypothetical protein (NCBI)||200, 350|
|RSP_0688||RSP_0688||Probable penicillin-binding protein (NCBI)||52, 200|
|RSP_0698||fnrL||Crp-Fnr regulatory protein (FnrL) (NCBI)||200, 262|
|RSP_0806||DppB||ABC dipeptide transporter, inner membrane subunit DppB (NCBI)||114, 204|
|RSP_0807||DdpA||ABC dipeptide transporter, substrate-binding subunit DdpA (NCBI)||114, 204|
|RSP_0959||RSP_0959||ATPase (NCBI)||174, 200|
|RSP_1022||RSP_1022||conserved hypothetical protein (possibly transmembrane) (NCBI)||200, 323|
|RSP_1023||RSP_1023||hypothetical protein (NCBI)||185, 200|
|RSP_1024||RSP_1024||Putative MoxR family protein (NCBI)||171, 200|
|RSP_1029||RSP_1029||possible Histidine triad (HIT) protein (NCBI)||127, 200|
|RSP_1109||cysK||Cysteine synthase (NCBI)||112, 200|
|RSP_1199||RSP_1199||secreted conserved hypothetical protein (NCBI)||200, 262|
|RSP_1748||bztB||ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztB (NCBI)||70, 204|
|RSP_1749||bztC||ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztC (NCBI)||70, 204|
|RSP_1750||bztD||ABC glutamate/glutamine/aspartate/asparagine transporter, ATPase subunit bztD (NCBI)||70, 204|
|RSP_1882||RSP_1882||ABC polyamine/opine transporter, ATPase subunit (NCBI)||70, 204|
|RSP_1883||RSP_1883||ABC polyamine/opine transporter, periplasmic substrate-binding protein (NCBI)||70, 204|
|RSP_1884||RSP_1884||ABC polyamine/opine transporter, inner membrane subunit (NCBI)||70, 204|
|RSP_1886||RSP_1886||ABC polyamine/opine transporter, inner membrane subunit (NCBI)||70, 204|
|RSP_2141||RSP_2141||ABC polyamine transporter, periplasmic substrate-binding protein (NCBI)||102, 204|
|RSP_2179||proV||ABC glycine betaine/L-proline tranporter, ATPase subunit, ProV (NCBI)||70, 204|
|RSP_2180||proW||ABC glycine betaine/L-proline transporter, inner membrane subunit (NCBI)||70, 204|
|RSP_2261||ydjI||Antifreeze protein, type I (NCBI)||64, 200|
|RSP_2344||fabI1||enoyl-acyl carrier protein reductase (NCBI)||72, 200|
|RSP_2410||rpoH1||sigma factor RpoH1 (Sigma-32 group, heat shock) (NCBI)||200, 287|
|RSP_2550||exoK||endo-beta-1,3-1,4-glycanase protein (NCBI)||200, 262|
|RSP_2561||exoP||putative succinoglycan biosynthesis transport protein ExoP (NCBI)||114, 200|
|RSP_2562||exoM||succinoglycan biosynthesis protein exoM (NCBI)||114, 200|
|RSP_2563||exoA||Glycosyl transferase, family 2 (NCBI)||114, 200|
|RSP_2564||exoL||glycosyltransferase, Succinoglycan biosynthesis protein exoL (NCBI)||114, 200|
|RSP_2565||ugpG||UDPG-pyrophosphorylase (NCBI)||200, 223|
|RSP_2639||RSP_2639||Putative arginine-tRNA protein transferase (NCBI)||46, 200|
|RSP_2806||lon||Probable ATP-dependent protease La protein (NCBI)||3, 200|
|RSP_3229||RSP_3229||Membrane-bound lytic murein transglycosylase B (NCBI)||200, 262|
|RSP_3597||RSP_3597||CorC/Hlyc family protein with CBS domains (NCBI)||182, 200|
|RSP_3598||RSP_3598||Protein of unknown function UPF0054 (NCBI)||182, 200|
|RSP_3599||RSP_3599||hypothetical protein (NCBI)||56, 200|
|RSP_3802||RSP_3802||hypothetical protein (NCBI)||114, 204|
|RSP_3803||RSP_3803||hypothetical protein (NCBI)||114, 204|
|RSP_3804||RSP_3804||hypothetical protein (NCBI)||114, 204|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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