Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1624(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1624
Module neighborhood information for RSP_1624
|Gene||Common Name||Description||Module membership|
|RSP_0002||spbB||Histone-like nucleoid-structuring protein H-NS (NCBI)||48, 93|
|RSP_0009||RSP_0009||hypothetical protein (NCBI)||98, 208|
|RSP_0019||RSP_0019||hypothetical protein (NCBI)||48, 285|
|RSP_0189||RSP_0189||NADPH-dependent glutamate synthase beta chain and related oxidoreductase (NCBI)||43, 208|
|RSP_0190||accB||Biotin carboxyl carrier protein, AccB (NCBI)||43, 208|
|RSP_0191||accC||Biotin carboxylase (NCBI)||43, 208|
|RSP_0192||aat||possible leucyl/phenylalanyl-tRNA--protein transferase (NCBI)||43, 208|
|RSP_0196||clpX||ATP-dependent protease Clp, ATPase subunit (NCBI)||48, 52|
|RSP_0197||clpP||Protease subunit of ATP-dependent Clp proteases (NCBI)||48, 345|
|RSP_0555||ruvA||Holliday junction DNA helicase ruvA (NCBI)||4, 48|
|RSP_0556||ruvC||Holliday junction nuclease RuvC (NCBI)||4, 48|
|RSP_0557||RSP_0557||hypothetical protein (NCBI)||3, 48|
|RSP_0717||RSP_0717||hypothetical protein (NCBI)||48, 81|
|RSP_0718||rpsU||30S ribosomal protein S21 (RpsU) (NCBI)||48, 56|
|RSP_0962||RSP_0962||Dihydrolipoamide dehydrogenase (NCBI)||190, 208|
|RSP_0963||RSP_0963||Inner membrane protein (NCBI)||208, 221|
|RSP_0964||sucB||Dihydrolipoamide transsuccinylase (NCBI)||208, 297|
|RSP_0965||sucA||2-oxoglutarate dehydrogenase E1 component (RefSeq)||208, 297|
|RSP_0966||sucD||Succinyl-CoA synthetase, alpha subunit (NCBI)||208, 297|
|RSP_0967||sucC||Succinyl-CoA synthetase, beta subunit (NCBI)||208, 297|
|RSP_0970||RSP_0970||Putative citrate lyase beta chain (NCBI)||208, 263|
|RSP_1060||rnpA||Ribonuclease P protein component (NCBI)||182, 208|
|RSP_1061||RSP_1061||hypothetical protein (NCBI)||65, 208|
|RSP_1071||moaE||Molybdopterin converting factor subunit 2 (NCBI)||154, 208|
|RSP_1074||uvrC||Excinuclease ABC, C subunit (NCBI)||208, 340|
|RSP_1383||RSP_1383||hypothetical protein (NCBI)||48, 277|
|RSP_1517||spbA||Histone-like protein of HNS family (NCBI)||48, 327|
|RSP_1622||RSP_1622||Putative DNA-binding protein (NCBI)||93, 208|
|RSP_1624||RSP_1624||hypothetical protein (NCBI)||48, 208|
|RSP_1741||RSP_1741||Possible LuxR family protein (NCBI)||48, 181|
|RSP_1772||accA||Acetyl-CoA carboxylase, alpha subunit (NCBI)||48, 182|
|RSP_1793||RSP_1793||Single-strand DNA binding protein (NCBI)||48, 261|
|RSP_1864||RSP_1864||hypothetical protein (NCBI)||48, 309|
|RSP_1975||RSP_1975||aminopeptidase P (NCBI)||208, 326|
|RSP_1985||RSP_1985||hypothetical protein (NCBI)||48, 368|
|RSP_2175||RSP_2175||ABC transporter, ATPase subunit (NCBI)||48, 341|
|RSP_2297||atpA||F0F1-type ATP synthase alpha subunit (NCBI)||208, 369|
|RSP_2423||RSP_2423||putative Heat shock protein 15 (HSP15) (NCBI)||65, 208|
|RSP_2540||tatA||twin-arginine translocation system protein, TatA (NCBI)||48, 237|
|RSP_2625||nifU||NifU-related protein involved in Fe-S cluster formation (NCBI)||46, 48|
|RSP_2674||RSP_2674||hypothetical protein (NCBI)||48, 285|
|RSP_2763||RSP_2763||hypothetical protein (NCBI)||48, 64|
|RSP_2764||RSP_2764||hypothetical protein (NCBI)||48, 112|
|RSP_2773||RSP_2773||hypothetical protein (NCBI)||26, 48|
|RSP_2776||acpP||Acyl carrier protein, AcpP (NCBI)||46, 48|
|RSP_2924||RSP_2924||ABC branched-chain amino acid transporter family, ATPase subunit (NCBI)||65, 208|
|RSP_2925||RSP_2925||ABC branched-chain amino acid transporter family, ATPase subunit (NCBI)||65, 208|
|RSP_2926||RSP_2926||ABC branched-chain amino acid transporter family, inner membrane subunit (NCBI)||65, 208|
|RSP_2928||RSP_2928||hypothetical protein (NCBI)||65, 208|
|RSP_3007||RSP_3007||hypothetical protein (NCBI)||48, 250|
|RSP_3589||ihfB||Integration host factor beta-subunit (NCBI)||48, 81|
|RSP_3634||RSP_3634||hypothetical protein (NCBI)||48, 379|
|RSP_3661||RSP_3661||TRAP-T family transporter, periplasmic binding protein (NCBI)||208, 342|
|RSP_3662||RSP_3662||TRAP-T family transporter, large (12TMs) inner membrane subunit (NCBI)||208, 342|
|RSP_4301||RSP_4301||tRNA-Leu (NCBI)||48, 327|
|RSP_4314||RSP_4314||tRNA-Ser (NCBI)||35, 48|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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