Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1985(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_1985
|Gene||Common Name||Description||Module membership|
|RSP_0002||spbB||Histone-like nucleoid-structuring protein H-NS (NCBI)||48, 93|
|RSP_0019||RSP_0019||hypothetical protein (NCBI)||48, 285|
|RSP_0196||clpX||ATP-dependent protease Clp, ATPase subunit (NCBI)||48, 52|
|RSP_0197||clpP||Protease subunit of ATP-dependent Clp proteases (NCBI)||48, 345|
|RSP_0235||moaA||molybdenum cofactor biosynthesis protein A (NCBI)||132, 368|
|RSP_0555||ruvA||Holliday junction DNA helicase ruvA (NCBI)||4, 48|
|RSP_0556||ruvC||Holliday junction nuclease RuvC (NCBI)||4, 48|
|RSP_0557||RSP_0557||hypothetical protein (NCBI)||3, 48|
|RSP_0585||osmC||osmotically inducible protein OsmC (NCBI)||124, 368|
|RSP_0717||RSP_0717||hypothetical protein (NCBI)||48, 81|
|RSP_0718||rpsU||30S ribosomal protein S21 (RpsU) (NCBI)||48, 56|
|RSP_0753||SspA||Salt-stress induced outer membrane protein (NCBI)||280, 368|
|RSP_0948||otsA||probable OtsA trehalose-6-phosphate synthase (NCBI)||27, 368|
|RSP_0949||ostB||putative trehalose-6-phosphate phosphatase (NCBI)||7, 368|
|RSP_1159||galU||UDP-glucose pyrophosphate (NCBI)||132, 368|
|RSP_1190||RSP_1190||hypothetical protein (NCBI)||215, 368|
|RSP_1191||RSP_1191||transcriptional regulator, MarR family (NCBI)||215, 368|
|RSP_1276||RSP_1276||hypothetical protein (NCBI)||215, 368|
|RSP_1383||RSP_1383||hypothetical protein (NCBI)||48, 277|
|RSP_1517||spbA||Histone-like protein of HNS family (NCBI)||48, 327|
|RSP_1624||RSP_1624||hypothetical protein (NCBI)||48, 208|
|RSP_1741||RSP_1741||Possible LuxR family protein (NCBI)||48, 181|
|RSP_1772||accA||Acetyl-CoA carboxylase, alpha subunit (NCBI)||48, 182|
|RSP_1793||RSP_1793||Single-strand DNA binding protein (NCBI)||48, 261|
|RSP_1864||RSP_1864||hypothetical protein (NCBI)||48, 309|
|RSP_1985||RSP_1985||hypothetical protein (NCBI)||48, 368|
|RSP_2175||RSP_2175||ABC transporter, ATPase subunit (NCBI)||48, 341|
|RSP_2231||RSP_2231||hypothetical protein (NCBI)||181, 368|
|RSP_2335||wrbA||trp repressor binding protein WrbA, putative (NCBI)||124, 368|
|RSP_2379||RSP_2379||hypothetical protein (NCBI)||181, 368|
|RSP_2384||RSP_2384||hypothetical protein (NCBI)||19, 368|
|RSP_2430||RSP_2430||hypothetical protein (NCBI)||36, 368|
|RSP_2540||tatA||twin-arginine translocation system protein, TatA (NCBI)||48, 237|
|RSP_2569||sqdB||sulfolipid (UDP-sulfoquinovose) biosynthesis protein (NCBI)||339, 368|
|RSP_2625||nifU||NifU-related protein involved in Fe-S cluster formation (NCBI)||46, 48|
|RSP_2634||ccmH||Cytochrome c maturation protein, CcmH (NCBI)||215, 368|
|RSP_2673||RSP_2673||Glucose dehydrogenase (NCBI)||120, 368|
|RSP_2674||RSP_2674||hypothetical protein (NCBI)||48, 285|
|RSP_2681||rpoE||sigma factor, RpoE (NCBI)||181, 368|
|RSP_2763||RSP_2763||hypothetical protein (NCBI)||48, 64|
|RSP_2764||RSP_2764||hypothetical protein (NCBI)||48, 112|
|RSP_2773||RSP_2773||hypothetical protein (NCBI)||26, 48|
|RSP_2776||acpP||Acyl carrier protein, AcpP (NCBI)||46, 48|
|RSP_3007||RSP_3007||hypothetical protein (NCBI)||48, 250|
|RSP_3092||RSP_3092||hypothetical protein (NCBI)||202, 368|
|RSP_3093||RSP_3093||Predicted integral membrane protein (NCBI)||202, 368|
|RSP_3115||RSP_3115||Conserved hypothetical membrane protein (NCBI)||280, 368|
|RSP_3589||ihfB||Integration host factor beta-subunit (NCBI)||48, 81|
|RSP_3634||RSP_3634||hypothetical protein (NCBI)||48, 379|
|RSP_4301||RSP_4301||tRNA-Leu (NCBI)||48, 327|
|RSP_4314||RSP_4314||tRNA-Ser (NCBI)||35, 48|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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