Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1895(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1895
Module neighborhood information for RSP_1895
|Gene||Common Name||Description||Module membership|
|RSP_0010||RSP_0010||homoserine O-succinyltransferase (NCBI)||91, 133|
|RSP_0011||RSP_0011||Predicted hydrolases or acyltransferases (alpha/beta hydrolase) (NCBI)||91, 366|
|RSP_0013||RSP_0013||hypothetical protein (NCBI)||68, 91|
|RSP_0014||RSP_0014||transcriptional regulator, TetR family (NCBI)||91, 215|
|RSP_0774||RSP_0774||RNA binding protein (NCBI)||91, 184|
|RSP_1018||RSP_1018||Glycolate oxidase iron-sulfur subunit (NCBI)||91, 148|
|RSP_1019||RSP_1019||putative glycolate oxidase subunit protein (NCBI)||91, 148|
|RSP_1025||RSP_1025||hypothetical protein (NCBI)||210, 231|
|RSP_1026||RSP_1026||hypothetical protein (NCBI)||210, 231|
|RSP_1034||pdhR||Pyruvate dehydrogenase complex repressor (NCBI)||91, 148|
|RSP_1127||ElaA||acetyltransferase, GNAT family (NCBI)||214, 231|
|RSP_1130||RSP_1130||hypothetical membrane protein (NCBI)||54, 91|
|RSP_1146||gltB||Glutamine-pyruvate aminotransferase (NCBI)||231, 271|
|RSP_1147||RSP_1147||hypothetical protein (NCBI)||210, 231|
|RSP_1148||RSP_1148||hypothetical protein (NCBI)||210, 231|
|RSP_1172||dnaJ||Chaperone, DnaJ (NCBI)||91, 297|
|RSP_1258||RSP_1258||putative hydrolase (NCBI)||231, 280|
|RSP_1292||RSP_1292||putative Aldehyde dehydrogenase (NCBI)||91, 107|
|RSP_1487||RSP_1487||hypothetical protein (NCBI)||91, 289|
|RSP_1488||RSP_1488||Possible glyoxalase (NCBI)||91, 289|
|RSP_1490||RSP_1490||Putative ATP-dependent protease La, LON (NCBI)||231, 372|
|RSP_1491||RSP_1491||hypothetical protein (NCBI)||210, 231|
|RSP_1516||RSP_1516||putative S-adenosyl L-homocystein hydrolase (NCBI)||91, 197|
|RSP_1591||RSP_1591||Predicted Glutathione S-transferase (NCBI)||210, 231|
|RSP_1692||pduO||hypothetical protein (NCBI)||58, 231|
|RSP_1895||RSP_1895||Small-conductance mechanosensitive ion channel (NCBI)||91, 231|
|RSP_1899||RSP_1899||Predicted ATPase (NCBI)||91, 220|
|RSP_1900||RSP_1900||hypothetical protein (NCBI)||91, 233|
|RSP_1901||RSP_1901||Hypothetical protein with TPR repeat (NCBI)||91, 245|
|RSP_2128||purQ||phosphoribosylformylglycinamidine synthase I (FGAM) synthase (NCBI)||58, 231|
|RSP_2263||RSP_2263||hypothetical protein (NCBI)||91, 125|
|RSP_2268||RSP_2268||metallo Beta lactamase superfamily (NCBI)||210, 231|
|RSP_2312||RSP_2312||hypothetical protein (NCBI)||215, 231|
|RSP_2314||RSP_2314||oxidoreductase, Chromogranin/secretogranin (NCBI)||158, 231|
|RSP_2389||RSP_2389||putative glutathione peroxidase (NCBI)||210, 231|
|RSP_2456||radA||DNA Repair Protein (NCBI)||39, 91|
|RSP_2605||RSP_2605||hypothetical protein (NCBI)||91, 197|
|RSP_2606||RSP_2606||ArsR family Arsenical Resistance Operon Repressor (NCBI)||91, 197|
|RSP_2607||RSP_2607||nitrilotriacetate monooxygenase component B (NCBI)||91, 197|
|RSP_2608||corA||magnesium/cobalt transport protein, MIT family (NCBI)||91, 197|
|RSP_2645||eda||KDPG/KHG bifunctional aldolase (NCBI)||231, 301|
|RSP_2810||RSP_2810||ABC transporter, ATPase subunit (NCBI)||91, 294|
|RSP_2970||RSP_2970||Transporter, Major facilitator superfamily (MFS) (NCBI)||231, 356|
|RSP_3075||RSP_3075||hypothetical protein (NCBI)||210, 231|
|RSP_3076||RSP_3076||hypothetical protein (NCBI)||210, 231|
|RSP_3089||RSP_3089||hypothetical protein (NCBI)||210, 231|
|RSP_3107||RSP_3107||hypothetical protein (NCBI)||91, 350|
|RSP_3162||RSP_3162||hypothetical protein (NCBI)||58, 231|
|RSP_3163||RSP_3163||Probable oxidoreductase (NCBI)||58, 231|
|RSP_3164||RSP_3164||ferredoxin like protein (NCBI)||58, 231|
|RSP_3351||RSP_3351||hypothetical protein (NCBI)||210, 231|
|RSP_3384||RSP_3384||mandelate racemase/muconate lactonizing enzyme family protein (NCBI)||91, 346|
|RSP_3435||RSP_3435||possible DNA-binding protein (NCBI)||91, 316|
|RSP_3456||RSP_3456||Putative dihydrodipicolinate synthase (NCBI)||61, 91|
|RSP_3537||RSP_3537||alcohol dehydrogenase, zinc-containing (NCBI)||210, 231|
|RSP_3785||RSP_3785||putative bacteriophage-related protein (NCBI)||91, 105|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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