Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC0057(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC0057
|Gene||Common Name||Description||Module membership|
|BC0046||BC0046||Dimethyladenosine transferase (NCBI ptt file)||285, 394|
|BC0056||BC0056||Peptidyl-tRNA hydrolase (NCBI ptt file)||117, 243|
|BC0057||BC0057||hypothetical protein (NCBI ptt file)||243, 394|
|BC0105||BC0105||hypothetical Membrane Associated Protein (NCBI ptt file)||22, 243|
|BC0107||BC0107||2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (NCBI ptt file)||285, 394|
|BC0188||BC0188||Phosphoglucosamine mutase (NCBI ptt file)||394, 455|
|BC0254||BC0254||Homogentisate 1,2-dioxygenase (NCBI ptt file)||243, 263|
|BC0289||BC0289||O-sialoglycoprotein endopeptidase (RefSeq)||22, 394|
|BC0453||BC0453||Zinc uptake P-type ATPase (NCBI ptt file)||118, 394|
|BC0509||BC0509||Multidrug resistance ABC transporter ATP-binding and permease protein (NCBI ptt file)||394, 414|
|BC0513||BC0513||Daunorubicin resistance ATP-binding protein drrA (NCBI ptt file)||243, 467|
|BC0515||BC0515||ABC transporter permease protein (NCBI ptt file)||243, 467|
|BC0516||BC0516||LCTB protein (NCBI ptt file)||243, 467|
|BC0517||BC0517||Thioredoxin-dependent thiol peroxidase (NCBI ptt file)||243, 443|
|BC0544||BC0544||iron-sulfur cluster-binding protein (NCBI ptt file)||394, 476|
|BC0694||BC0694||Na+/H+ antiporter NapA (NCBI ptt file)||243, 252|
|BC1184||BC1184||Na+ driven multidrug efflux pump (NCBI ptt file)||243, 527|
|BC1578||BC1578||hypothetical protein (NCBI ptt file)||243, 256|
|BC1743||BC1743||Two-component response regulator (NCBI ptt file)||243, 252|
|BC2042||BC2042||putative NAD-dependent dehydrogenase (NCBI ptt file)||218, 243|
|BC3160||BC3160||Transcriptional regulator, TetR family (NCBI ptt file)||243, 260|
|BC3378||BC3378||Luciferase-like monooxygenase (NCBI ptt file)||306, 394|
|BC3410||BC3410||D-threo-aldose 1-dehydrogenase (NCBI ptt file)||228, 394|
|BC3471||BC3471||hypothetical protein (NCBI ptt file)||243, 306|
|BC3499||BC3499||hypothetical Cytosolic Protein (NCBI ptt file)||117, 394|
|BC3595||BC3595||Oxidoreductase (NCBI ptt file)||243, 306|
|BC3772||BC3772||tRNA 2-methylthioadenosine synthase (NCBI ptt file)||243, 399|
|BC3930||BC3930||Methyltransferase (NCBI ptt file)||243, 260|
|BC3948||BC3948||Cell division protein ftsW (NCBI ptt file)||243, 260|
|BC3969||BC3969||hypothetical protein (NCBI ptt file)||394, 479|
|BC4262||BC4262||5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file)||41, 394|
|BC4315||BC4315||Coproporphyrinogen oxidase, anaerobic (NCBI ptt file)||243, 252|
|BC4394||BC4394||ATPase, AAA family (NCBI ptt file)||122, 394|
|BC4426||BC4426||hypothetical Cytosolic Protein (NCBI ptt file)||170, 394|
|BC4568||BC4568||Multidrug resistance protein B (NCBI ptt file)||285, 394|
|BC4673||BC4673||hypothetical protein (NCBI ptt file)||243, 252|
|BC5067||BC5067||CrcB family protein (NCBI ptt file)||285, 394|
|BC5245||BC5245||SWF/SNF family helicase (NCBI ptt file)||193, 243|
|BC5340||BC5340||Transcriptional regulator, TetR family (NCBI ptt file)||243, 449|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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