Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC2145(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for BC2145
Module neighborhood information for BC2145
|Gene||Common Name||Description||Module membership|
|BC0345||BC0345||Isochorismatase (NCBI ptt file)||299, 395|
|BC0419||BC0419||Hydroxyethylthiazole kinase (NCBI ptt file)||409, 491|
|BC0420||BC0420||Thiamin-phosphate pyrophosphorylase (NCBI ptt file)||409, 491|
|BC0483||BC0483||Penicillin-binding protein (NCBI ptt file)||47, 299|
|BC0637||BC0637||putative protein kinase (NCBI ptt file)||284, 299|
|BC0686||BC0686||hypothetical protein (NCBI ptt file)||47, 409|
|BC0993||BC0993||Transcriptional regulator, PadR family (NCBI ptt file)||299, 359|
|BC1348||BC1348||hypothetical protein (NCBI ptt file)||73, 409|
|BC1484||BC1484||ATP-dependent DNA helicase recQ (NCBI ptt file)||286, 409|
|BC1566||BC1566||Thermostable carboxypeptidase 1 (NCBI ptt file)||203, 299|
|BC1567||BC1567||Ribosomal-protein-alanine acetyltransferase (NCBI ptt file)||299, 395|
|BC1610||BC1610||Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file)||409, 491|
|BC1927||BC1927||Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein (NCBI ptt file)||409, 434|
|BC2051||BC2051||Ribosomal-protein-alanine acetyltransferase (NCBI ptt file)||29, 409|
|BC2053||BC2053||Phosphohydrolase (MutT/nudix family protein) (NCBI ptt file)||409, 420|
|BC2108||BC2108||RNA polymerase ECF-type sigma factor (NCBI ptt file)||98, 299|
|BC2145||BC2145||5-methylcytosine-specific restriction enzyme A (NCBI ptt file)||299, 409|
|BC2190||BC2190||Penicillin-binding protein (NCBI ptt file)||225, 299|
|BC2226||BC2226||hypothetical protein (NCBI ptt file)||225, 299|
|BC2265||BC2265||hypothetical protein (NCBI ptt file)||284, 299|
|BC2266||BC2266||hypothetical protein (NCBI ptt file)||220, 299|
|BC2299||BC2299||hypothetical protein (NCBI ptt file)||299, 316|
|BC2313||BC2313||DNA-binding protein HU (NCBI ptt file)||288, 299|
|BC2332||BC2332||hypothetical protein (NCBI ptt file)||163, 299|
|BC2433||BC2433||Indole-3-pyruvate decarboxylase (NCBI ptt file)||299, 397|
|BC2478||BC2478||ABC transporter ATP-binding protein (NCBI ptt file)||409, 491|
|BC2482||BC2482||hypothetical Cytosolic Protein (NCBI ptt file)||163, 299|
|BC2603||BC2603||hypothetical protein (NCBI ptt file)||63, 299|
|BC2609||BC2609||Cytochrome P450 (NCBI ptt file)||299, 359|
|BC2658||BC2658||Serine/threonine protein kinase (NCBI ptt file)||203, 409|
|BC2679||BC2679||hypothetical protein (NCBI ptt file)||47, 299|
|BC2697||BC2697||Translation initiation inhibitor (NCBI ptt file)||203, 299|
|BC2714||BC2714||Acetyltransferase (NCBI ptt file)||47, 409|
|BC2737||BC2737||hypothetical protein (NCBI ptt file)||203, 299|
|BC2770||BC2770||Transcriptional regulator, DeoR family (NCBI ptt file)||409, 496|
|BC2782||BC2782||Glutamate-rich protein grpB (NCBI ptt file)||203, 299|
|BC2829||BC2829||putative Metal-dependent phosphohydrolase (NCBI ptt file)||146, 299|
|BC2852||BC2852||Cell division protein DIVIC (NCBI ptt file)||409, 491|
|BC3037||BC3037||Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (NCBI ptt file)||47, 299|
|BC3123||BC3123||hydrolase (NCBI ptt file)||26, 299|
|BC3219||BC3219||hypothetical protein (NCBI ptt file)||333, 409|
|BC3220||BC3220||hypothetical protein (NCBI ptt file)||299, 409|
|BC3231||BC3231||Microcin C7 self-immunity protein mccF (NCBI ptt file)||279, 409|
|BC3252||BC3252||hypothetical protein (NCBI ptt file)||299, 449|
|BC3263||BC3263||hypothetical Cytosolic Protein (NCBI ptt file)||299, 496|
|BC3264||BC3264||hypothetical protein (NCBI ptt file)||264, 299|
|BC3469||BC3469||hypothetical protein (NCBI ptt file)||299, 359|
|BC3490||BC3490||Penicillin-binding protein (NCBI ptt file)||299, 449|
|BC3672||BC3672||hypothetical protein (NCBI ptt file)||173, 409|
|BC3998||BC3998||hypothetical protein (NCBI ptt file)||26, 299|
|BC4014||BC4014||Neopullulanase (NCBI ptt file)||63, 299|
|BC4074||BC4074||Anti-sigma F factor antagonist (NCBI ptt file)||203, 409|
|BC4131||BC4131||hypothetical protein (NCBI ptt file)||63, 299|
|BC5322||BC5322||Nitrilotriacetate monooxygenase component B (NCBI ptt file)||173, 409|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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