Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC2416(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC2416
|Gene||Common Name||Description||Module membership|
|BC0034||BC0034||CsfB protein (NCBI ptt file)||217, 351|
|BC0286||BC0286||ATP/GTP hydrolase (NCBI ptt file)||252, 351|
|BC0287||BC0287||Glycoprotease protein family (NCBI ptt file)||245, 351|
|BC0288||BC0288||Ribosomal-protein-alanine acetyltransferase (NCBI ptt file)||217, 351|
|BC0308||BC0308||Glycosyltransferase (NCBI ptt file)||272, 487|
|BC0310||BC0310||Methyltransferase (NCBI ptt file)||272, 487|
|BC0341||BC0341||NAD-dependent DNA ligase (NCBI ptt file)||252, 351|
|BC0391||BC0391||hypothetical protein (NCBI ptt file)||263, 351|
|BC0392||BC0392||hypothetical protein (NCBI ptt file)||351, 449|
|BC0403||BC0403||Glutamine transport ATP-binding protein glnQ (NCBI ptt file)||487, 512|
|BC0818||BC0818||Oligopeptide transport system permease protein oppB (NCBI ptt file)||217, 351|
|BC0831||BC0831||hypothetical protein (NCBI ptt file)||141, 487|
|BC0942||BC0942||hypothetical protein (NCBI ptt file)||67, 351|
|BC0968||BC0968||putative hydrolase (NCBI ptt file)||96, 487|
|BC1141||BC1141||Spore germination protein PE (NCBI ptt file)||217, 351|
|BC1142||BC1142||Spore germination protein PD (NCBI ptt file)||351, 407|
|BC1143||BC1143||Spore germination protein PC (NCBI ptt file)||281, 351|
|BC1272||BC1272||DNA integration/recombination/invertion protein (NCBI ptt file)||397, 487|
|BC1494||BC1494||N-acetylmuramoyl-L-alanine amidase (NCBI ptt file)||351, 457|
|BC1550||BC1550||Multimodular transpeptidase-transglycosylase PBP 1A (NCBI ptt file)||351, 461|
|BC1559||BC1559||Spore coat protein (NCBI ptt file)||281, 351|
|BC1616||BC1616||hypothetical Membrane Associated Protein (NCBI ptt file)||225, 487|
|BC2283||BC2283||Quinolone resistence NorA protein (NCBI ptt file)||135, 487|
|BC2377||BC2377||hypothetical protein (NCBI ptt file)||86, 351|
|BC2416||BC2416||hypothetical protein (NCBI ptt file)||351, 487|
|BC2541||BC2541||ABC transporter ATP-binding protein (NCBI ptt file)||136, 351|
|BC2542||BC2542||Acetyltransferase (NCBI ptt file)||86, 351|
|BC2544||BC2544||ABC transporter permease protein (NCBI ptt file)||217, 351|
|BC2813||BC2813||CAAX amino terminal protease family (NCBI ptt file)||253, 487|
|BC3087||BC3087||Phosphoenolpyruvate synthase (NCBI ptt file)||281, 351|
|BC3109||BC3109||Pyrroline-5-carboxylate reductase (NCBI ptt file)||234, 487|
|BC3147||BC3147||hypothetical protein (NCBI ptt file)||186, 487|
|BC3198||BC3198||hypothetical protein (NCBI ptt file)||25, 487|
|BC3255||BC3255||Molybdate metabolism regulator (NCBI ptt file)||351, 457|
|BC3474||BC3474||hypothetical protein (NCBI ptt file)||217, 351|
|BC3514||BC3514||Glucose-1-phosphate cytidylyltransferase (NCBI ptt file)||9, 487|
|BC3534||BC3534||IG hypothetical 17193 (NCBI ptt file)||393, 487|
|BC3593||BC3593||Transcriptional regulator, DeoR family (NCBI ptt file)||217, 351|
|BC4399||BC4399||hypothetical protein (NCBI ptt file)||56, 351|
|BC4520||uvrC||excinuclease ABC subunit C (RefSeq)||217, 351|
|BC4577||BC4577||hypothetical protein (NCBI ptt file)||281, 351|
|BC4579||BC4579||Primosomal protein dnaI (NCBI ptt file)||252, 351|
|BC4774||BC4774||Non-heme chloroperoxidase (NCBI ptt file)||102, 487|
|BC4788||BC4788||hypothetical protein (NCBI ptt file)||123, 487|
|BC5166||BC5166||hypothetical protein (NCBI ptt file)||136, 351|
|BC5167||BC5167||Excinuclease ABC subunit A (NCBI ptt file)||351, 457|
|BC5168||BC5168||Excinuclease ABC subunit B (NCBI ptt file)||351, 457|
|BC5204||BC5204||Peptidoglycan N-acetylglucosamine deacetylase (NCBI ptt file)||281, 351|
|BC5221||BC5221||Phage infection protein (NCBI ptt file)||281, 351|
|BC5223||BC5223||hypothetical Exported Protein (NCBI ptt file)||351, 457|
|BC5285||BC5285||Bacitracin transport ATP-binding protein bcrA (NCBI ptt file)||123, 487|
|BC5347||BC5347||UV-endonuclease (UvsE/Uve1/UvdE Family) (NCBI ptt file)||351, 456|
|BC5390||BC5390||Cell wall hydrolase cwlJ (NCBI ptt file)||351, 456|
|BC5391||BC5391||hypothetical protein (NCBI ptt file)||241, 351|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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