Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC2546(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC2546
|Gene||Common Name||Description||Module membership|
|BC0052||BC0052||Translation initiation inhibitor (NCBI ptt file)||187, 401|
|BC0291||BC0291||AT-rich DNA-binding protein (NCBI ptt file)||119, 187|
|BC0405||BC0405||Arginine repressor, argR (NCBI ptt file)||100, 187|
|BC0448||BC0448||Calcium-transporting ATPase (NCBI ptt file)||167, 190|
|BC0492||BC0492||Pyruvate formate-lyase activating enzyme (NCBI ptt file)||167, 190|
|BC1131||BC1131||Cold shock protein (NCBI ptt file)||187, 477|
|BC1448||BC1448||Nitric oxide dioxygenase (NCBI ptt file)||190, 320|
|BC1463||BC1463||Purine nucleoside phosphorylase (NCBI ptt file)||28, 187|
|BC1515||BC1515||Nucleoside diphosphate kinase (NCBI ptt file)||187, 227|
|BC1820||BC1820||Deoxyribose-phosphate aldolase (NCBI ptt file)||187, 401|
|BC2118||BC2118||Respiratory nitrate reductase alpha chain (NCBI ptt file)||190, 320|
|BC2119||BC2119||Respiratory nitrate reductase beta chain (NCBI ptt file)||190, 320|
|BC2120||BC2120||Respiratory nitrate reductase delta chain (NCBI ptt file)||190, 320|
|BC2121||BC2121||Respiratory nitrate reductase gamma chain (NCBI ptt file)||190, 320|
|BC2125||BC2125||Molybdopterin biosynthesis MoeA protein (NCBI ptt file)||190, 320|
|BC2126||BC2126||Molybdopterin (MPT) converting factor, subunit 2 (NCBI ptt file)||190, 320|
|BC2127||BC2127||Molybdopterin (MPT) converting factor, subunit 1 (NCBI ptt file)||190, 429|
|BC2128||BC2128||Nitrite extrusion protein (NCBI ptt file)||190, 320|
|BC2132||BC2132||Ferrochelatase (NCBI ptt file)||190, 320|
|BC2133||BC2133||CbiX protein (NCBI ptt file)||190, 320|
|BC2134||BC2134||Uroporphyrin-III C-methyltransferase (NCBI ptt file)||190, 320|
|BC2135||BC2135||Nitrite reductase [NAD(P)H] small subunit (NCBI ptt file)||190, 320|
|BC2136||BC2136||Nitrite reductase [NAD(P)H] large subunit (NCBI ptt file)||190, 320|
|BC2137||BC2137||Nitric oxide-dependent regulator DnrN (NCBI ptt file)||190, 320|
|BC2215||BC2215||Mechanosensitive ion channel (NCBI ptt file)||28, 187|
|BC2442||BC2442||Transcriptional regulator, LuxR family (NCBI ptt file)||184, 187|
|BC2546||BC2546||hypothetical protein (NCBI ptt file)||187, 190|
|BC2798||BC2798||Chitin binding protein (NCBI ptt file)||190, 294|
|BC2826||BC2826||Manganese-dependent inorganic pyrophosphatase (NCBI ptt file)||187, 227|
|BC2956||BC2956||hypothetical protein (NCBI ptt file)||190, 415|
|BC3439||BC3439||hydroxylamine reductase (RefSeq)||190, 320|
|BC3661||BC3661||CcdC protein (NCBI ptt file)||166, 187|
|BC4046||BC4046||hypothetical protein (NCBI ptt file)||28, 187|
|BC4093||BC4093||Ribosomal-protein-serine acetyltransferase (NCBI ptt file)||187, 401|
|BC4197||BC4197||Protein Translation Elongation Factor P (EF-P) (NCBI ptt file)||187, 350|
|BC4425||BC4425||hypothetical transcriptional regulator (NCBI ptt file)||28, 187|
|BC4625||BC4625||Universal stress protein family (NCBI ptt file)||129, 187|
|BC4760||BC4760||Acetyltransferase (NCBI ptt file)||187, 296|
|BC4860||BC4860||hypothetical protein (NCBI ptt file)||187, 381|
|BC5190||BC5190||Probable Sigma (54) modulation protein / SSU ribosomal protein S30P (NCBI ptt file)||129, 187|
|BC5323||BC5323||hypothetical protein (NCBI ptt file)||126, 187|
|BC5374||BC5374||Glycerophosphoryl diester phosphodiesterase (NCBI ptt file)||129, 187|
|BC5378||BC5378||4-oxalocrotonate tautomerase (NCBI ptt file)||187, 401|
|BC5409||BC5409||Catabolite gene activator (NCBI ptt file)||187, 380|
|BC5444||BC5444||Nitric oxide synthase (NCBI ptt file)||187, 290|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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