Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC2944(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC2944
|Gene||Common Name||Description||Module membership|
|BC0626||BC0626||Cardiolipin synthetase (NCBI ptt file)||1, 224|
|BC0637||BC0637||putative protein kinase (NCBI ptt file)||284, 299|
|BC0665||BC0665||Transaldolase (NCBI ptt file)||224, 480|
|BC0699||BC0699||Arginine permease (NCBI ptt file)||284, 434|
|BC0958||BC0958||Transcriptional regulator (NCBI ptt file)||284, 316|
|BC0984||BC0984||DNA-binding protein (NCBI ptt file)||224, 446|
|BC1024||BC1024||Glyoxalase family protein (NCBI ptt file)||129, 224|
|BC1025||BC1025||Glyoxalase family protein (NCBI ptt file)||129, 224|
|BC1052||BC1052||Protein ecsC (NCBI ptt file)||216, 284|
|BC1084||BC1084||hypothetical protein (NCBI ptt file)||128, 284|
|BC1123||BC1123||Zinc metalloprotease (NCBI ptt file)||13, 284|
|BC1176||BC1176||hypothetical protein (NCBI ptt file)||263, 284|
|BC1186||BC1186||hypothetical protein (NCBI ptt file)||52, 284|
|BC1339||BC1339||hypothetical protein (NCBI ptt file)||216, 284|
|BC1366||BC1366||SSEB protein (NCBI ptt file)||137, 284|
|BC1367||BC1367||Muramoyltetrapeptide carboxypeptidase (NCBI ptt file)||46, 284|
|BC1381||BC1381||hypothetical protein (NCBI ptt file)||180, 224|
|BC1518||BC1518||Histidinol-phosphate aminotransferase (NCBI ptt file)||284, 302|
|BC1695||BC1695||Transcriptional regulator, MarR family (NCBI ptt file)||284, 333|
|BC1958||BC1958||3-oxoacyl-[acyl-carrier protein] reductase (NCBI ptt file)||216, 284|
|BC1989||BC1989||hypothetical Membrane Spanning Protein (NCBI ptt file)||284, 402|
|BC2017||BC2017||Ribosomal-protein-serine acetyltransferase (NCBI ptt file)||284, 400|
|BC2032||BC2032||Phosphohydrolase (MutT/nudix family protein) (NCBI ptt file)||224, 284|
|BC2056||BC2056||hypothetical protein (NCBI ptt file)||224, 381|
|BC2057||BC2057||Stomatin like protein (NCBI ptt file)||224, 381|
|BC2179||BC2179||Acetyltransferase (NCBI ptt file)||216, 224|
|BC2186||BC2186||hypothetical protein (NCBI ptt file)||284, 434|
|BC2209||BC2209||D-amino acid aminotransferase (RefSeq)||120, 284|
|BC2265||BC2265||hypothetical protein (NCBI ptt file)||284, 299|
|BC2729||BC2729||Penicillin-binding protein (NCBI ptt file)||284, 434|
|BC2943||BC2943||hypothetical protein (NCBI ptt file)||224, 294|
|BC2944||BC2944||hypothetical protein (NCBI ptt file)||224, 284|
|BC2945||BC2945||hypothetical protein (NCBI ptt file)||189, 224|
|BC2959||BC2959||Malate:quinone oxidoreductase (NCBI ptt file)||264, 284|
|BC3163||BC3163||Transcriptional regulator, TetR family (NCBI ptt file)||224, 401|
|BC3221||BC3221||surface protein (NCBI ptt file)||224, 316|
|BC3607||BC3607||spore peptidoglycan hydrolase (N-acetylglucosaminidase) (NCBI ptt file)||284, 430|
|BC3740||BC3740||ADA regulatory protein (NCBI ptt file)||224, 337|
|BC3741||BC3741||O6-methylguanine-DNA methyltransferase (NCBI ptt file)||224, 337|
|BC4354||BC4354||Glyoxalase family protein (NCBI ptt file)||284, 288|
|BC4565||BC4565||CAAX amino terminal protease family (NCBI ptt file)||246, 284|
|BC4610||BC4610||hypothetical protein (NCBI ptt file)||28, 224|
|BC4908||BC4908||hypothetical Membrane Associated Protein (NCBI ptt file)||20, 284|
|BC4951||BC4951||hypothetical protein (NCBI ptt file)||98, 284|
|BC4961||BC4961||hypothetical Cytosolic Protein (NCBI ptt file)||224, 264|
|BC5006||BC5006||Prolyne dehydrogenase (NCBI ptt file)||284, 473|
|BC5014||BC5014||hypothetical exported repetitive protein (NCBI ptt file)||284, 359|
|BC5045||BC5045||hypothetical protein (NCBI ptt file)||1, 284|
|BC5046||BC5046||Lysine decarboxylase family (NCBI ptt file)||20, 284|
|BC5284||BC5284||ABC transporter permease protein (NCBI ptt file)||123, 284|
|BC5333||BC5333||Fructose-1,6-bisphosphatase (NCBI ptt file)||224, 284|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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