Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC1186(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC1186
|Gene||Common Name||Description||Module membership|
|BC0606||BC0606||Vancomycin B-type resistance protein vanW (NCBI ptt file)||52, 280|
|BC0634||BC0634||Spore germination protein KB (NCBI ptt file)||52, 397|
|BC0637||BC0637||putative protein kinase (NCBI ptt file)||284, 299|
|BC0699||BC0699||Arginine permease (NCBI ptt file)||284, 434|
|BC0958||BC0958||Transcriptional regulator (NCBI ptt file)||284, 316|
|BC1052||BC1052||Protein ecsC (NCBI ptt file)||216, 284|
|BC1084||BC1084||hypothetical protein (NCBI ptt file)||128, 284|
|BC1103||BC1103||hypothetical protein (NCBI ptt file)||52, 150|
|BC1123||BC1123||Zinc metalloprotease (NCBI ptt file)||13, 284|
|BC1176||BC1176||hypothetical protein (NCBI ptt file)||263, 284|
|BC1186||BC1186||hypothetical protein (NCBI ptt file)||52, 284|
|BC1339||BC1339||hypothetical protein (NCBI ptt file)||216, 284|
|BC1366||BC1366||SSEB protein (NCBI ptt file)||137, 284|
|BC1367||BC1367||Muramoyltetrapeptide carboxypeptidase (NCBI ptt file)||46, 284|
|BC1518||BC1518||Histidinol-phosphate aminotransferase (NCBI ptt file)||284, 302|
|BC1658||BC1658||Flagellin (NCBI ptt file)||52, 238|
|BC1695||BC1695||Transcriptional regulator, MarR family (NCBI ptt file)||284, 333|
|BC1833||BC1833||hypothetical protein (NCBI ptt file)||52, 253|
|BC1958||BC1958||3-oxoacyl-[acyl-carrier protein] reductase (NCBI ptt file)||216, 284|
|BC1989||BC1989||hypothetical Membrane Spanning Protein (NCBI ptt file)||284, 402|
|BC2013||BC2013||Alpha/beta hydrolase (NCBI ptt file)||52, 218|
|BC2017||BC2017||Ribosomal-protein-serine acetyltransferase (NCBI ptt file)||284, 400|
|BC2032||BC2032||Phosphohydrolase (MutT/nudix family protein) (NCBI ptt file)||224, 284|
|BC2186||BC2186||hypothetical protein (NCBI ptt file)||284, 434|
|BC2209||BC2209||D-amino acid aminotransferase (RefSeq)||120, 284|
|BC2265||BC2265||hypothetical protein (NCBI ptt file)||284, 299|
|BC2729||BC2729||Penicillin-binding protein (NCBI ptt file)||284, 434|
|BC2877||BC2877||Zwittermicin A resistance protein ZmaR (NCBI ptt file)||52, 72|
|BC2899||BC2899||2'-5' RNA ligase (NCBI ptt file)||52, 218|
|BC2944||BC2944||hypothetical protein (NCBI ptt file)||224, 284|
|BC2959||BC2959||Malate:quinone oxidoreductase (NCBI ptt file)||264, 284|
|BC3127||BC3127||Transcriptional regulators, LysR family (NCBI ptt file)||52, 359|
|BC3205||BC3205||Succinoglycan biosynthesis protein (NCBI ptt file)||26, 52|
|BC3241||BC3241||Hydrogenase maturation protein hypF (NCBI ptt file)||52, 104|
|BC3339||BC3339||Phosphohydrolase (MutT/nudix family protein) (NCBI ptt file)||52, 146|
|BC3390||BC3390||Nitroreductase family protein (NCBI ptt file)||52, 402|
|BC3607||BC3607||spore peptidoglycan hydrolase (N-acetylglucosaminidase) (NCBI ptt file)||284, 430|
|BC4217||BC4217||ABC transporter permease protein (NCBI ptt file)||52, 150|
|BC4218||BC4218||ABC transporter permease protein (NCBI ptt file)||52, 150|
|BC4350||BC4350||hypothetical Exported Protein (NCBI ptt file)||52, 253|
|BC4354||BC4354||Glyoxalase family protein (NCBI ptt file)||284, 288|
|BC4565||BC4565||CAAX amino terminal protease family (NCBI ptt file)||246, 284|
|BC4908||BC4908||hypothetical Membrane Associated Protein (NCBI ptt file)||20, 284|
|BC4951||BC4951||hypothetical protein (NCBI ptt file)||98, 284|
|BC5006||BC5006||Prolyne dehydrogenase (NCBI ptt file)||284, 473|
|BC5014||BC5014||hypothetical exported repetitive protein (NCBI ptt file)||284, 359|
|BC5045||BC5045||hypothetical protein (NCBI ptt file)||1, 284|
|BC5046||BC5046||Lysine decarboxylase family (NCBI ptt file)||20, 284|
|BC5284||BC5284||ABC transporter permease protein (NCBI ptt file)||123, 284|
|BC5333||BC5333||Fructose-1,6-bisphosphatase (NCBI ptt file)||224, 284|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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