Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC3021(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC3021
|Gene||Common Name||Description||Module membership|
|BC0222||BC0222||Periplasmic molybdate-binding protein (NCBI ptt file)||85, 395|
|BC0345||BC0345||Isochorismatase (NCBI ptt file)||299, 395|
|BC0450||BC0450||Protein tyrosine phosphatase (NCBI ptt file)||112, 258|
|BC0451||BC0451||hypothetical protein (NCBI ptt file)||112, 258|
|BC0898||BC0898||3-hydroxybutyryl-CoA dehydratase (NCBI ptt file)||112, 395|
|BC1015||BC1015||Choloylglycine hydrolase (NCBI ptt file)||23, 112|
|BC1338||BC1338||Oligoendopeptidase F (NCBI ptt file)||203, 395|
|BC1395||BC1395||hypothetical protein (NCBI ptt file)||154, 395|
|BC1507||BC1507||hypothetical protein (NCBI ptt file)||112, 525|
|BC1567||BC1567||Ribosomal-protein-alanine acetyltransferase (NCBI ptt file)||299, 395|
|BC1594||BC1594||Isochorismatase (NCBI ptt file)||203, 395|
|BC1607||BC1607||Fatty acid hydroxylase FAH1P (NCBI ptt file)||163, 395|
|BC2072||BC2072||Acetyltransferase (NCBI ptt file)||112, 328|
|BC2073||BC2073||hypothetical protein (NCBI ptt file)||112, 328|
|BC2105||BC2105||Lactoylglutathione lyase (NCBI ptt file)||395, 413|
|BC2182||BC2182||Histidinol-phosphatase (NCBI ptt file)||203, 395|
|BC2183||BC2183||Acetyltransferase (NCBI ptt file)||203, 395|
|BC2475||BC2475||hypothetical Membrane Spanning Protein (NCBI ptt file)||395, 502|
|BC2511||BC2511||hypothetical protein (NCBI ptt file)||160, 395|
|BC2672||BC2672||Methyltransferase (NCBI ptt file)||330, 395|
|BC2706||BC2706||Acetyltransferase (NCBI ptt file)||230, 395|
|BC2708||BC2708||hypothetical Cytosolic Protein (NCBI ptt file)||279, 395|
|BC2803||BC2803||Ubiquinone/menaquinone biosynthesis methyltransferase UBIE (NCBI ptt file)||113, 395|
|BC2918||BC2918||Phosphopantothenoylcysteine decarboxylase (NCBI ptt file)||112, 328|
|BC2919||BC2919||Aminoglycoside N3'-acetyltransferase (NCBI ptt file)||112, 328|
|BC3012||BC3012||Adenine deaminase (NCBI ptt file)||112, 358|
|BC3021||BC3021||hypothetical Cytosolic Protein (NCBI ptt file)||112, 395|
|BC3034||BC3034||Cytosine deaminase (NCBI ptt file)||113, 395|
|BC3036||BC3036||hypothetical protein (NCBI ptt file)||395, 469|
|BC3051||BC3051||Ribosomal-protein-alanine acetyltransferase (NCBI ptt file)||154, 395|
|BC3157||BC3157||IG hypothetical 18565 (NCBI ptt file)||112, 258|
|BC3338||BC3338||hypothetical Membrane Spanning Protein (NCBI ptt file)||154, 395|
|BC3519||BC3519||Response regulator aspartate phosphatase inhibitor (NCBI ptt file)||330, 395|
|BC3556||BC3556||3-oxoacyl-[acyl-carrier protein] reductase (NCBI ptt file)||395, 413|
|BC3994||BC3994||Exopolyphosphatase (NCBI ptt file)||112, 307|
|BC4023||BC4023||Acetyl-CoA acetyltransferase (NCBI ptt file)||112, 120|
|BC4523||BC4523||Electron transfer flavoprotein beta-subunit (NCBI ptt file)||112, 328|
|BC4524||BC4524||3-hydroxybutyryl-CoA dehydratase (NCBI ptt file)||112, 328|
|BC4525||BC4525||Transcriptional regulator, TetR family (NCBI ptt file)||112, 328|
|BC5002||BC5002||Acyl-CoA dehydrogenase (NCBI ptt file)||112, 328|
|BC5003||BC5003||3-ketoacyl-CoA thiolase (NCBI ptt file)||112, 328|
|BC5004||BC5004||Enoyl-CoA hydratase (NCBI ptt file)||112, 328|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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