Organism : Clostridium acetobutylicum | Module List :
Signal peptidase II (PSP1) homolog, YAAT B.subtilis ortholog (NCBI ptt file)
Functional Annotations (1)
|Uncharacterized homolog of PSP1||cog/ cog|
Regulation information for CAC0301(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0301
|Uncharacterized homolog of PSP1||cog/ cog|
Module neighborhood information for CAC0301
|Gene||Common Name||Description||Module membership|
|CAC0138||CAC0138||ABC transporter, ATP-binding component (NCBI ptt file)||36, 114|
|CAC0139||CAC0139||Predicted permease (NCBI ptt file)||36, 114|
|CAC0141||CAC0141||Membrane permease, predicted cation efflux pumps (NCBI ptt file)||36, 114|
|CAC0158||glmS||Glucoseamine-fructose-6-phosphate aminotransferase (gene glmS) (NCBI ptt file)||36, 84|
|CAC0285||CAC0285||DNA-damage repair protein, dinP/uvrX ortholog (NCBI ptt file)||271, 314|
|CAC0301||CAC0301||Signal peptidase II (PSP1) homolog, YAAT B.subtilis ortholog (NCBI ptt file)||36, 271|
|CAC0367||rocB||Arginine degradation protein (gene rocB) (NCBI ptt file)||256, 271|
|CAC0368||CAC0368||4 animobutyrate aminotransferase (NCBI ptt file)||172, 271|
|CAC0472||dnaK||DnaK protein (heat shock protein), HSP70/DnaK family (NCBI ptt file)||14, 271|
|CAC0821||CAC0821||Transcriptional regulator (TetR/AcrR family) (NCBI ptt file)||14, 271|
|CAC0822||CAC0822||ABC transporter, ATP-binding protein (NCBI ptt file)||234, 271|
|CAC0823||CAC0823||Predicted membrane protein (NCBI ptt file)||14, 271|
|CAC1429||galE||UDP-glucose 4-epimerase (NCBI ptt file)||271, 329|
|CAC1629||CAC1629||Putative intracellular protease/amidase, ThiJ family (NCBI ptt file)||36, 45|
|CAC1727||CAC1727||Protein serine/threonine phosphatases, PP2C family (YLOO B.subtilis ortholog) (NCBI ptt file)||6, 271|
|CAC1734||CAC1734||Uncharacterized, alkaline shock induced protein (NCBI ptt file)||36, 329|
|CAC1735||CAC1735||Predicted kinase related to hydroxyacetone kinase, YLOV ortholog (NCBI ptt file)||36, 335|
|CAC1748||rncS||DsRNA-specific ribonuclease III (NCBI ptt file)||271, 335|
|CAC1836||mutL||DNA mismatch repair enzyme, MutL (NCBI ptt file)||36, 159|
|CAC1838||CAC1838||Predicted Fe-S oxidoreductase, YMCB B.subtilis ortholog (NCBI ptt file)||36, 159|
|CAC1953||CAC1953||Predicted membrane protein (NCBI ptt file)||271, 331|
|CAC2435||CAC2435||Response regulator (CheY-like domain and HTH-type DNA-binding domain) (NCBI ptt file)||243, 271|
|CAC2436||CAC2436||Uncharacterized conserved membrane protein (NCBI ptt file)||44, 271|
|CAC2565||CAC2565||NifU-related domain containing protein (NCBI ptt file)||36, 153|
|CAC2629||CAC2629||Hypothetical secreted protein (NCBI ptt file)||36, 310|
|CAC2643||CAC2643||Hypothetical protein (NCBI ptt file)||159, 271|
|CAC2703||groEL||Chaperonin GroEL, HSP60 family (NCBI ptt file)||204, 271|
|CAC2704||groES||Co-chaperonin GroES, HSP10 family (NCBI ptt file)||204, 271|
|CAC2858||mreV||Shape-determining protein envB (HSP70 family charepones) (NCBI ptt file)||36, 63|
|CAC2880||CAC2880||Ribose 5-phosphate isomerase, RpiB (NCBI ptt file)||36, 329|
|CAC3017||CAC3017||Predicted xylanase/chitin deacetylase (NCBI ptt file)||36, 335|
|CAC3040||CAC3040||CPSC/CAPB subfamily ATPase (NCBI ptt file)||36, 235|
|CAC3138||fus||Translation elongation factor EF-G (NCBI ptt file)||36, 335|
|CAC3187||CAC3187||Predicted nucleic-acid-binding protein protein, containing HHH domain, YACK B.subtilis ortholog (NCBI ptt file)||36, 329|
|CAC3188||sms||Predicted ATP-dependent serine protease, RADA homolog (NCBI ptt file)||36, 271|
|CAC3218||CAC3218||Periplasmic trypsin-like serine protease (with PDZ domain), HtrA subfamily (NCBI ptt file)||81, 271|
|CAC3708||CAC3708||Hypothetical protein (NCBI ptt file)||36, 44|
|CAC3709||CAC3709||DNA segregation ATPase, FtsK/SpoIIIE family, YUKA B.subtilis ortholog (NCBI ptt file)||36, 44|
|CAC3710||CAC3710||Uncharacterized protein, YUKC B.subtilis homolog (NCBI ptt file)||36, 44|
|CAC3711||CAC3711||Hypothetical protein (NCBI ptt file)||36, 44|
|CAC3716||lonB||Lon-like ATP-dependent protease (NCBI ptt file)||36, 114|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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