Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0402(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC0402
|Gene||Common Name||Description||Module membership|
|CAC0039||CAC0039||DNA segregation ATPase FtsK/SpoIIIE family protein, contains FHA domain (NCBI ptt file)||258, 333|
|CAC0048||CAC0048||Hypothetical protein, CF-17 family (NCBI ptt file)||264, 333|
|CAC0101||CAC0101||Methyl-accepting chemotaxis protein (NCBI ptt file)||241, 333|
|CAC0363||CAC0363||Deoxyinosine 3'endonuclease (NCBI ptt file)||333, 347|
|CAC0364||CAC0364||Metal-dependent hydrolases of the metallobeta-lactamase superfamily (NCBI ptt file)||141, 333|
|CAC0402||CAC0402||Possible transcriptional regulatory protein, AsnC family (NCBI ptt file)||125, 333|
|CAC0622||CAC0622||Polyphosphate kinase (NCBI ptt file)||125, 145|
|CAC0782||CAC0782||Hypothetical protein (NCBI ptt file)||125, 257|
|CAC0811||CAC0811||Hydrogenase expression-formation factor (hypD) (NCBI ptt file)||78, 125|
|CAC0927||CAC0927||Hypothetical protein, CF-2 family (NCBI ptt file)||46, 125|
|CAC0960||CAC0960||Predicted xylanase related protein (NCBI ptt file)||125, 307|
|CAC1431||rpiA||Ribose 5-phosphate isomerase (NCBI ptt file)||125, 127|
|CAC1457||CAC1457||PTS system, fructose(mannose)-specific IIA component (NCBI ptt file)||125, 136|
|CAC1961||CAC1961||Predicted phosphohydrolases, Icc family (NCBI ptt file)||125, 257|
|CAC2029||CAC2029||Hypothetical protein (NCBI ptt file)||141, 333|
|CAC2044||CAC2044||Hypothetical protein (NCBI ptt file)||141, 333|
|CAC2101||CAC2101||Hypothetical protein (NCBI ptt file)||54, 333|
|CAC2109||CAC2109||Acetyltransferase (NCBI ptt file)||125, 148|
|CAC2702||CAC2702||Possible signal transduction protein (containing EAL, CBS and GGDEF domains) (NCBI ptt file)||123, 333|
|CAC2748||deaD||ATP dependent RNA helicase DeaD, superfamily II (NCBI ptt file)||59, 333|
|CAC2766||CAC2766||Thiamine biosynthesis lipoprotein ApbE (NCBI ptt file)||46, 333|
|CAC2768||CAC2768||Transcriptional regulators, AcrR family (NCBI ptt file)||241, 333|
|CAC2792||CAC2792||Uncharcterized conserved membrane protein, YXAI B.subtilis homolog (NCBI ptt file)||148, 333|
|CAC2816||CAC2816||Hypothetical protein, CF-17 family (NCBI ptt file)||241, 333|
|CAC3045||CAC3045||CPSB/CAPC ortholog, PHP family hydrolase (NCBI ptt file)||272, 333|
|CAC3238||CAC3238||Ucharacterized Fe-S oxidoreductase (NCBI ptt file)||125, 241|
|CAC3257||CAC3257||Predicted membrane protein (NCBI ptt file)||137, 333|
|CAC3358||CAC3358||Site-specific DNA methylase dam (NCBI ptt file)||125, 171|
|CAC3367||CAC3367||Protein distantly similar to N-terminal fragment of HSP60 chaperonin family (NCBI ptt file)||125, 171|
|CAC3431||CAC3431||Membrane export protein, related to SecD/SecF protein exporters (NCBI ptt file)||141, 333|
|CAC3432||CAC3432||Alpha/beta superfamily hydrolase (NCBI ptt file)||141, 333|
|CAC3506||CAC3506||Predicted MDR-type permease (NCBI ptt file)||43, 125|
|CAC3532||CAC3532||Hypothetical protein (NCBI ptt file)||241, 333|
|CAC3689||CAC3689||Uncharacterized conserved protein, phnB family (NCBI ptt file)||125, 333|
|CAC3690||CAC3690||Uncharacterized conserved protein, related to polyketide cyclase (CypC) (NCBI ptt file)||78, 125|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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