Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0670(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC0670
|Gene||Common Name||Description||Module membership|
|CAC0169||CAC0169||ABC transporter (ATP-binding protein) (NCBI ptt file)||169, 202|
|CAC0170||CAC0170||Predicted permease (NCBI ptt file)||169, 202|
|CAC0171||CAC0171||Predicted permease (NCBI ptt file)||169, 202|
|CAC0227||CAC0227||Predicted permease (NCBI ptt file)||169, 208|
|CAC0257||nifK||Nitrogenase molibdenum-iron protein, beta chain, gene nifK (NCBI ptt file)||144, 169|
|CAC0260||nifV||Homocitrate syntase, omega subunit nifV (nivO) (NCBI ptt file)||141, 169|
|CAC0295||CAC0295||Metal-dependent amidohydrolases (NCBI ptt file)||108, 190|
|CAC0343||CAC0343||Hypothetical protein, CF-23 family (NCBI ptt file)||190, 258|
|CAC0431||CAC0431||Hypothetical protein, YitT family (NCBI ptt file)||169, 207|
|CAC0619||CAC0619||Nitrate ABC transporter ATP binding protein (NCBI ptt file)||190, 270|
|CAC0670||CAC0670||Hypothetical protein (NCBI ptt file)||169, 190|
|CAC0671||CAC0671||Ortholog yrbG, yetE, ykjA, ydfS, ydfR B.subtilis (NCBI ptt file)||169, 190|
|CAC0762||CAC0762||Permease, probably tetracycline resistance protein (NCBI ptt file)||169, 240|
|CAC0924||CAC0924||Predicted membrane protein (NCBI ptt file)||145, 190|
|CAC0955||CAC0955||ATP-dependent Zn protease (NCBI ptt file)||150, 190|
|CAC1017||CAC1017||SpoVB related membrane protein (NCBI ptt file)||108, 169|
|CAC1271||CAC1271||ComC competence related protein (NCBI ptt file)||190, 312|
|CAC1331||CAC1331||Short-chain alcohol dehydrogenase (NCBI ptt file)||148, 169|
|CAC1332||uxuA||D-mannonate hydrolase (NCBI ptt file)||150, 169|
|CAC1350||CAC1350||Hypothetical protein (NCBI ptt file)||102, 190|
|CAC1359||CAC1359||Predicted xylanase/chitin deacetylase (NCBI ptt file)||150, 190|
|CAC1525||CAC1525||Uncharacterized protein, homolog of PHNB E.coli (NCBI ptt file)||169, 190|
|CAC1529||CAC1529||Beta-xylosidase, family 43 glycosyl hydrolase (NCBI ptt file)||169, 170|
|CAC1530||CAC1530||Sugar-proton symporter (NCBI ptt file)||169, 328|
|CAC1865||CAC1865||Site-specific recombinases, DNA invertase Pin homolog (NCBI ptt file)||190, 336|
|CAC1959||CAC1959||Uncharacterized protein, YYAC B.subtilis homolog (fragment) (NCBI ptt file)||190, 208|
|CAC2039||CAC2039||Hypothetical protein, CF-5 family (NCBI ptt file)||44, 190|
|CAC2454||CAC2454||Hypothetical protein, CF-13 family (NCBI ptt file)||190, 264|
|CAC2506||CAC2506||SpoIID-like domain containing protein; peptidoglycan-binding domain (NCBI ptt file)||102, 190|
|CAC2560||CAC2560||Predicted acetyltransferase (NCBI ptt file)||69, 190|
|CAC2567||CAC2567||Superoxide dismutase (Fe/Mn family) (NCBI ptt file)||141, 190|
|CAC2586||CAC2586||Predicted membrane protein (NCBI ptt file)||123, 169|
|CAC2587||CAC2587||GGDEF domain containing protein (NCBI ptt file)||150, 169|
|CAC2588||CAC2588||Glycosyltransferase (NCBI ptt file)||150, 169|
|CAC2589||CAC2589||Glycosyltransferase (NCBI ptt file)||169, 240|
|CAC2590||CAC2590||Uncharacterized conserved membrane protein (NCBI ptt file)||144, 169|
|CAC2591||CAC2591||Hypothetical protein, CF-41 family (NCBI ptt file)||144, 169|
|CAC2614||CAC2614||Beta-phosphoglucomutase (NCBI ptt file)||141, 190|
|CAC2804||CAC2804||Predicted Zn-dependent hydrolase from metallo-beta-lactamase superfamily (NCBI ptt file)||144, 169|
|CAC2908||CAC2908||Spore coat protein cotS related (NCBI ptt file)||190, 312|
|CAC2909||CAC2909||Spore coat protein cotS related (diverged) (NCBI ptt file)||114, 190|
|CAC2910||CAC2910||Spore coat protein cotS related (NCBI ptt file)||190, 312|
|CAC3246||CAC3246||Hypothetical protein (NCBI ptt file)||145, 190|
|CAC3307||CAC3307||TPR-repeats containing protein (NCBI ptt file)||109, 190|
|CAC3308||CAC3308||Glycosyltransferase fused to TPR-repeat domain (NCBI ptt file)||3, 190|
|CAC3310||CAC3310||Predicted UDP-glucose 6-dehydrogenase (NCBI ptt file)||19, 190|
|CAC3416||CAC3416||Uncharacterized protein, homolog of YYBI B.subtilis fused to uncharacterized domain similar to A.thaliana (gi:3292817 and 5002526) (NCBI ptt file)||190, 361|
|CAC3480||CAC3480||Hypothetical protein (NCBI ptt file)||141, 190|
|CAC3483||CAC3483||Nitroreductase family protein fused to ferredoxin domain (NCBI ptt file)||1, 169|
|CAC3531||CAC3531||IS605/IS200-like transposase (NCBI ptt file)||190, 247|
|CAC3549||CAC3549||Subtilisin-like serine protease (NCBI ptt file)||150, 190|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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