Organism : Clostridium acetobutylicum | Module List :
TPR-repeats containing protein (NCBI ptt file)
Functional Annotations (1)
Regulation information for CAC3307(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC3307
Module neighborhood information for CAC3307
|Gene||Common Name||Description||Module membership|
|CAC0089||serA||D-3 phosphoglycerate dehydrogenase (NCBI ptt file)||109, 343|
|CAC0090||CAC0090||Xylanase/chitin deacetylase, NodB family (NCBI ptt file)||109, 312|
|CAC0225||CAC0225||Sensory transduction histidine kinase (NCBI ptt file)||57, 109|
|CAC0277||CAC0277||HD-GYP hydrolase domain containing protein (NCBI ptt file)||109, 298|
|CAC0295||CAC0295||Metal-dependent amidohydrolases (NCBI ptt file)||108, 190|
|CAC0343||CAC0343||Hypothetical protein, CF-23 family (NCBI ptt file)||190, 258|
|CAC0452||CAC0452||Permease (NCBI ptt file)||99, 109|
|CAC0619||CAC0619||Nitrate ABC transporter ATP binding protein (NCBI ptt file)||190, 270|
|CAC0641||CAC0641||Uncharacterized conserved protein (NCBI ptt file)||109, 348|
|CAC0670||CAC0670||Hypothetical protein (NCBI ptt file)||169, 190|
|CAC0671||CAC0671||Ortholog yrbG, yetE, ykjA, ydfS, ydfR B.subtilis (NCBI ptt file)||169, 190|
|CAC0924||CAC0924||Predicted membrane protein (NCBI ptt file)||145, 190|
|CAC0955||CAC0955||ATP-dependent Zn protease (NCBI ptt file)||150, 190|
|CAC1098||polA||DNA polymerase I, polA (NCBI ptt file)||99, 109|
|CAC1271||CAC1271||ComC competence related protein (NCBI ptt file)||190, 312|
|CAC1297||CAC1297||N-terminal fragment of elongation factor Ts (NCBI ptt file)||49, 109|
|CAC1312||CAC1312||Hypothetical protein (NCBI ptt file)||109, 176|
|CAC1350||CAC1350||Hypothetical protein (NCBI ptt file)||102, 190|
|CAC1359||CAC1359||Predicted xylanase/chitin deacetylase (NCBI ptt file)||150, 190|
|CAC1404||CAC1404||Transcriptional regulator of sugar metabolism (deoR family) (NCBI ptt file)||64, 109|
|CAC1525||CAC1525||Uncharacterized protein, homolog of PHNB E.coli (NCBI ptt file)||169, 190|
|CAC1539||CAC1539||Gamma-glutamylcysteine synthetase (NCBI ptt file)||109, 222|
|CAC1559||CAC1559||Predicted transcriptional regulator (NCBI ptt file)||109, 151|
|CAC1635||CAC1635||Predicted nucleic acid binding protein, containing 2 S1 domains, YITL B.subtilis ortholog (NCBI ptt file)||109, 312|
|CAC1651||CAC1651||Predicted GTPase with uncharacterized domain, ortholog of T.maritima (4980952) (NCBI ptt file)||109, 283|
|CAC1652||aspA||Aspartate ammonia-lyase (NCBI ptt file)||109, 329|
|CAC1661||CAC1661||Predicted secreted nucleic acid binding protein (NCBI ptt file)||25, 109|
|CAC1865||CAC1865||Site-specific recombinases, DNA invertase Pin homolog (NCBI ptt file)||190, 336|
|CAC1955||CAC1955||Hypothetical protein (NCBI ptt file)||57, 109|
|CAC1959||CAC1959||Uncharacterized protein, YYAC B.subtilis homolog (fragment) (NCBI ptt file)||190, 208|
|CAC1965||greA||Transcription elongation factor GreA (NCBI ptt file)||63, 109|
|CAC2037||CAC2037||Hypothetical protein, CF-39 family (NCBI ptt file)||109, 312|
|CAC2039||CAC2039||Hypothetical protein, CF-5 family (NCBI ptt file)||44, 190|
|CAC2437||CAC2437||Uncharacterized conserved protein (NCBI ptt file)||100, 109|
|CAC2454||CAC2454||Hypothetical protein, CF-13 family (NCBI ptt file)||190, 264|
|CAC2506||CAC2506||SpoIID-like domain containing protein; peptidoglycan-binding domain (NCBI ptt file)||102, 190|
|CAC2560||CAC2560||Predicted acetyltransferase (NCBI ptt file)||69, 190|
|CAC2567||CAC2567||Superoxide dismutase (Fe/Mn family) (NCBI ptt file)||141, 190|
|CAC2614||CAC2614||Beta-phosphoglucomutase (NCBI ptt file)||141, 190|
|CAC2787||CAC2787||Serine/threonine protein phosphatase (NCBI ptt file)||109, 128|
|CAC2873||CAC2873||Acetyl-CoA acetyltransferase (NCBI ptt file)||10, 109|
|CAC2908||CAC2908||Spore coat protein cotS related (NCBI ptt file)||190, 312|
|CAC2909||CAC2909||Spore coat protein cotS related (diverged) (NCBI ptt file)||114, 190|
|CAC2910||CAC2910||Spore coat protein cotS related (NCBI ptt file)||190, 312|
|CAC3152||CAC3152||DNA-dependent RNA polymerase sigma subunit (NCBI ptt file)||5, 109|
|CAC3155||CAC3155||Uncharacterized conserved protein, THY1 family (NCBI ptt file)||19, 109|
|CAC3221||prs||Phosphoribosylpyrophosphate synthetase (NCBI ptt file)||109, 251|
|CAC3246||CAC3246||Hypothetical protein (NCBI ptt file)||145, 190|
|CAC3307||CAC3307||TPR-repeats containing protein (NCBI ptt file)||109, 190|
|CAC3308||CAC3308||Glycosyltransferase fused to TPR-repeat domain (NCBI ptt file)||3, 190|
|CAC3310||CAC3310||Predicted UDP-glucose 6-dehydrogenase (NCBI ptt file)||19, 190|
|CAC3416||CAC3416||Uncharacterized protein, homolog of YYBI B.subtilis fused to uncharacterized domain similar to A.thaliana (gi:3292817 and 5002526) (NCBI ptt file)||190, 361|
|CAC3480||CAC3480||Hypothetical protein (NCBI ptt file)||141, 190|
|CAC3531||CAC3531||IS605/IS200-like transposase (NCBI ptt file)||190, 247|
|CAC3549||CAC3549||Subtilisin-like serine protease (NCBI ptt file)||150, 190|
|CAC3602||CAC3602||HD superfamily hydrolase (NCBI ptt file)||86, 109|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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