Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0859(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC0859
|Gene||Common Name||Description||Module membership|
|CAC0075||CAC0075||Ferredoxin (NCBI ptt file)||69, 150|
|CAC0136||CAC0136||Hypothetical protein (NCBI ptt file)||69, 205|
|CAC0137||CAC0137||Hypothetical protein, CF-5 family (NCBI ptt file)||69, 205|
|CAC0347||CAC0347||Hypothetical protein (NCBI ptt file)||309, 344|
|CAC0381||CAC0381||Methyl-accepting chemotaxis protein (NCBI ptt file)||74, 344|
|CAC0457||CAC0457||Transcriptional regulator, AcrR family (NCBI ptt file)||74, 344|
|CAC0501||bacA||Bacitracin resistance protein (bacA) (NCBI ptt file)||69, 300|
|CAC0583||CAC0583||CBIK protein (chain A, anaerobic cobalt chelatase) (NCBI ptt file)||117, 344|
|CAC0647||CAC0647||Predicted membrane protein (NCBI ptt file)||149, 344|
|CAC0814||CAC0814||3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file)||244, 344|
|CAC0859||CAC0859||Ortholog putative anti-SigV factor [Bacillus subtilis] (NCBI ptt file)||69, 344|
|CAC0881||CAC0881||Hypothetical protein (NCBI ptt file)||267, 344|
|CAC1012||CAC1012||Uncharacterized membrane protein, homolog of YNGA/YWCD B.suntilis (NCBI ptt file)||13, 69|
|CAC1145||CAC1145||Hypothetical protein (NCBI ptt file)||326, 344|
|CAC1317||CAC1317||Potassium channel subunit (NCBI ptt file)||117, 344|
|CAC1399||CAC1399||ABC transporter, permease component (NCBI ptt file)||69, 306|
|CAC1555||CAC1555||Flagellin (NCBI ptt file)||53, 69|
|CAC1592||CAC1592||Predicted permease, YCGR B.subtilis ortholog (NCBI ptt file)||69, 345|
|CAC1593||CAC1593||Zn-binding lipoprotein related (surface adhesin A), ADHS (NCBI ptt file)||69, 282|
|CAC1614||CAC1614||Predicted glycosyltransferase (NCBI ptt file)||69, 117|
|CAC1615||CAC1615||Predicted glycosyltransferase (NCBI ptt file)||69, 82|
|CAC1645||CAC1645||Ankyrin repeats containing protein (NCBI ptt file)||69, 102|
|CAC1963||CAC1963||5'-nucleotidase/2',3'-cyclic phosphodiesterase related enzyme (NCBI ptt file)||69, 205|
|CAC1995||CAC1995||Hypothetical protein (NCBI ptt file)||69, 166|
|CAC2096||CAC2096||Hypothetical protein (NCBI ptt file)||69, 312|
|CAC2177||CAC2177||Ucharacterized protein, CGEB homolog (NCBI ptt file)||69, 361|
|CAC2257||CAC2257||Hypothetical protein (NCBI ptt file)||4, 69|
|CAC2400||CAC2400||Serine/threonine kinase related protein, inactivated (HRDL motif absent) (fragment) (NCBI ptt file)||69, 137|
|CAC2402||CAC2402||TPR repeats containing protein (NCBI ptt file)||69, 102|
|CAC2419||CAC2419||Methyl-accepting chemotaxis protein (NCBI ptt file)||69, 205|
|CAC2560||CAC2560||Predicted acetyltransferase (NCBI ptt file)||69, 190|
|CAC2705||CAC2705||Uncharacterized membrane protein, homolog of Aquifex (GI:2984271) (NCBI ptt file)||74, 344|
|CAC2732||CAC2732||ABC transporter, ATPase component (NCBI ptt file)||69, 359|
|CAC2733||CAC2733||Uncharacterized conserved membrane protein (NCBI ptt file)||69, 74|
|CAC2877||CAC2877||ABC-type iron (III) transport system, ATPase component (NCBI ptt file)||69, 344|
|CAC2878||CAC2878||ABC-type iron (III) transport system, permease component (NCBI ptt file)||69, 322|
|CAC3085||CAC3085||TPR-repeat-containing protein; Cell-adhesion domain (NCBI ptt file)||225, 344|
|CAC3086||CAC3086||Protein containing cell adhesion domain (NCBI ptt file)||225, 344|
|CAC3168||CAC3168||Predicted membrane protein (NCBI ptt file)||62, 344|
|CAC3385||CAC3385||Hypothetical protein (NCBI ptt file)||69, 205|
|CAC3406||CAC3406||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||140, 344|
|CAC3413||CAC3413||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||89, 344|
|CAC3433||CAC3433||Transcriptional regulators, AcrR family (NCBI ptt file)||150, 344|
|CAC3434||CAC3434||Hypothetical protein (NCBI ptt file)||205, 344|
|CAC3488||CAC3488||Predicted transcriptional regulator (NCBI ptt file)||69, 208|
|CAC3489||CAC3489||Hypothetical protein (NCBI ptt file)||69, 74|
|CAC3494||CAC3494||Transcription regulator, YOBV B.subtilis homolog (NCBI ptt file)||102, 344|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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