Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2400(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2400
|Gene||Common Name||Description||Module membership|
|CAC0075||CAC0075||Ferredoxin (NCBI ptt file)||69, 150|
|CAC0080||agrC||Histidine kinase-like ATPase (NCBI ptt file)||137, 241|
|CAC0136||CAC0136||Hypothetical protein (NCBI ptt file)||69, 205|
|CAC0137||CAC0137||Hypothetical protein, CF-5 family (NCBI ptt file)||69, 205|
|CAC0252||CAC0252||Molybdate-binding protein (NCBI ptt file)||137, 148|
|CAC0317||CAC0317||Sensory transduction histidine kinase (NCBI ptt file)||137, 253|
|CAC0336||CAC0336||Hypothetical protein, CF-22 family (NCBI ptt file)||137, 163|
|CAC0485||CAC0485||TRNA-processing ribonuclease BN (NCBI ptt file)||137, 258|
|CAC0501||bacA||Bacitracin resistance protein (bacA) (NCBI ptt file)||69, 300|
|CAC0703||CAC0703||Sugar ABC-transporter, ATP-ase component (NCBI ptt file)||95, 137|
|CAC0753||CAC0753||PolyA polymerase related protein (HD hydrolase) and P-loop ATP-ase domain (NCBI ptt file)||137, 353|
|CAC0839||potB||ABC-type spermidine/putrescine transport system, permease component I (NCBI ptt file)||137, 153|
|CAC0859||CAC0859||Ortholog putative anti-SigV factor [Bacillus subtilis] (NCBI ptt file)||69, 344|
|CAC1012||CAC1012||Uncharacterized membrane protein, homolog of YNGA/YWCD B.suntilis (NCBI ptt file)||13, 69|
|CAC1125||CAC1125||Hypothetical protein (NCBI ptt file)||137, 165|
|CAC1194||CAC1194||Hypothetical protein (NCBI ptt file)||137, 253|
|CAC1284||prmA||SAM-dependent methyltransferase (NCBI ptt file)||47, 137|
|CAC1352||CAC1352||Membrane associated chemotaxis sensory transducer protein (MSP domain and HAMP domain) (NCBI ptt file)||137, 256|
|CAC1399||CAC1399||ABC transporter, permease component (NCBI ptt file)||69, 306|
|CAC1465||CAC1465||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||137, 313|
|CAC1496||CAC1496||Uncharacterized protein, homolog of YCGL B.subtilis (NCBI ptt file)||71, 137|
|CAC1555||CAC1555||Flagellin (NCBI ptt file)||53, 69|
|CAC1592||CAC1592||Predicted permease, YCGR B.subtilis ortholog (NCBI ptt file)||69, 345|
|CAC1593||CAC1593||Zn-binding lipoprotein related (surface adhesin A), ADHS (NCBI ptt file)||69, 282|
|CAC1607||CAC1607||Hypothetical protein (NCBI ptt file)||4, 137|
|CAC1614||CAC1614||Predicted glycosyltransferase (NCBI ptt file)||69, 117|
|CAC1615||CAC1615||Predicted glycosyltransferase (NCBI ptt file)||69, 82|
|CAC1631||CAC1631||Biotin synthase family enzyme (NCBI ptt file)||137, 241|
|CAC1645||CAC1645||Ankyrin repeats containing protein (NCBI ptt file)||69, 102|
|CAC1845||motB||Flagellar motor protein MotB (NCBI ptt file)||123, 137|
|CAC1963||CAC1963||5'-nucleotidase/2',3'-cyclic phosphodiesterase related enzyme (NCBI ptt file)||69, 205|
|CAC1995||CAC1995||Hypothetical protein (NCBI ptt file)||69, 166|
|CAC2096||CAC2096||Hypothetical protein (NCBI ptt file)||69, 312|
|CAC2177||CAC2177||Ucharacterized protein, CGEB homolog (NCBI ptt file)||69, 361|
|CAC2257||CAC2257||Hypothetical protein (NCBI ptt file)||4, 69|
|CAC2344||CAC2344||LPS biosynthesis protein , RfbU family (NCBI ptt file)||137, 159|
|CAC2350||CAC2350||Sugar transaminase, involved in dTDP-4-amino-4,6-dideoxyglucose biosynthesis (NCBI ptt file)||100, 137|
|CAC2400||CAC2400||Serine/threonine kinase related protein, inactivated (HRDL motif absent) (fragment) (NCBI ptt file)||69, 137|
|CAC2402||CAC2402||TPR repeats containing protein (NCBI ptt file)||69, 102|
|CAC2419||CAC2419||Methyl-accepting chemotaxis protein (NCBI ptt file)||69, 205|
|CAC2560||CAC2560||Predicted acetyltransferase (NCBI ptt file)||69, 190|
|CAC2690||CAC2690||Transcriptional regulator, LysR family (NCBI ptt file)||86, 137|
|CAC2732||CAC2732||ABC transporter, ATPase component (NCBI ptt file)||69, 359|
|CAC2733||CAC2733||Uncharacterized conserved membrane protein (NCBI ptt file)||69, 74|
|CAC2874||CAC2874||UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file)||137, 315|
|CAC2877||CAC2877||ABC-type iron (III) transport system, ATPase component (NCBI ptt file)||69, 344|
|CAC2878||CAC2878||ABC-type iron (III) transport system, permease component (NCBI ptt file)||69, 322|
|CAC2893||CAC2893||Hypothetical protein (NCBI ptt file)||63, 137|
|CAC2978||gatC||Glu-tRNA amidotransferase, subunit C (NCBI ptt file)||47, 137|
|CAC3257||CAC3257||Predicted membrane protein (NCBI ptt file)||137, 333|
|CAC3385||CAC3385||Hypothetical protein (NCBI ptt file)||69, 205|
|CAC3488||CAC3488||Predicted transcriptional regulator (NCBI ptt file)||69, 208|
|CAC3489||CAC3489||Hypothetical protein (NCBI ptt file)||69, 74|
|CAC3493||CAC3493||Predicted transcriptional regulator component, YOBU B.subtilis homolog (NCBI ptt file)||137, 241|
|CAC3669||CAC3669||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||65, 137|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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