Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1034(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1034
|Gene||Common Name||Description||Module membership|
|CAC0019||CAC0019||Transcriptional regulator, AcrR family (NCBI ptt file)||73, 341|
|CAC0297||CAC0297||Lysine decarboxylase (NCBI ptt file)||73, 363|
|CAC0480||nrdD||Oxygen-sensitive ribonucleoside-triphosphate reductase nrdD (NCBI ptt file)||73, 363|
|CAC0486||CAC0486||Hypothetical protein (NCBI ptt file)||73, 367|
|CAC0525||CAC0525||Sensory transduction histidine kinase (HisKA and HATPase_c domains) (NCBI ptt file)||70, 73|
|CAC0642||CAC0642||Conserved domain seen in the bacterial SpoT (NCBI ptt file)||73, 367|
|CAC0653||CAC0653||Response regulator (CheY-like receiver domain and HTH DNA binding domain) (NCBI ptt file)||294, 317|
|CAC0654||CAC0654||Sensory transduction histidine kinase (NCBI ptt file)||294, 317|
|CAC0787||CAC0787||Uncharacterized conserved protein, repeats (NCBI ptt file)||73, 154|
|CAC0985||CAC0985||ABC transporter, permease component (NCBI ptt file)||146, 294|
|CAC0992||CAC0992||Hypothetical protein (NCBI ptt file)||73, 281|
|CAC1034||CAC1034||Hypothetical protein (NCBI ptt file)||73, 294|
|CAC1450||CAC1450||Predicted alpha/beta superfamily hydrolase (NCBI ptt file)||294, 345|
|CAC1606||CAC1606||Uncharacterized conserved protein (NCBI ptt file)||4, 73|
|CAC1653||CAC1653||Predicted glycosyltransferases involved in cell wall biogenesis (NCBI ptt file)||73, 118|
|CAC1658||CAC1658||Phospholipase D family protein (NCBI ptt file)||73, 326|
|CAC1663||CAC1663||Hypothetical protein (NCBI ptt file)||73, 366|
|CAC1771||CAC1771||Uncharacterized protein, ykrI B.subtilis homolog (NCBI ptt file)||73, 158|
|CAC1817||CAC1817||Stage V sporulation protein, spoVS (NCBI ptt file)||38, 73|
|CAC1831||CAC1831||Protein containing Zn-finger domain (NCBI ptt file)||29, 73|
|CAC1841||CAC1841||Uncharacterized protein, related to Spore coat protein CotS (NCBI ptt file)||73, 269|
|CAC1989||CAC1989||ABC-type iron (III) transport system, ATPase component (NCBI ptt file)||68, 294|
|CAC1990||CAC1990||ABC-type iron (III) transport system, permease component (NCBI ptt file)||166, 294|
|CAC1991||CAC1991||Uncharacterized protein, YIIM family (NCBI ptt file)||68, 294|
|CAC1993||moaA||Molybdenum cofactor biosynthesis enzyme MoaA, Fe-S oxidoreductase (NCBI ptt file)||97, 294|
|CAC1999||CAC1999||Uncharacterized protein related to hypothetical protein Cj1507c from Campylobacter jejuni (NCBI ptt file)||97, 294|
|CAC2000||iorB||Indolepyruvate ferredoxin oxidoreductase, subunit beta (NCBI ptt file)||68, 294|
|CAC2012||fadB||Enoyl-CoA hydratase (NCBI ptt file)||97, 294|
|CAC2287||CAC2287||Acyl-CoA reductase LuxC (NCBI ptt file)||73, 345|
|CAC2310||CAC2310||Methenyl tetrahydrofolate cyclohydrolase (serine cycle enzyme) (NCBI ptt file)||57, 294|
|CAC2336||CAC2336||TPR repeats containing protein (NCBI ptt file)||53, 294|
|CAC2337||CAC2337||Phosphomannomutase (NCBI ptt file)||225, 294|
|CAC2465||CAC2465||Uncharacterized conserved protein (NCBI ptt file)||73, 367|
|CAC2480||CAC2480||Predicted acetyltransferase (NCBI ptt file)||73, 228|
|CAC2481||CAC2481||Predicted kinase from adenilate kinase family, FLAR-like protein (NCBI ptt file)||146, 294|
|CAC2492||CAC2492||Predicted membrane, YNAG B.subtilis ortholog (NCBI ptt file)||270, 294|
|CAC2571||CAC2571||Predicted acetyltransferase (NCBI ptt file)||67, 294|
|CAC2789||CAC2789||Hypothetical protein (NCBI ptt file)||73, 289|
|CAC2802||CAC2802||Predicted phosphoglycerol transferase (alkaline phosphatase superfamily), YFNI B.subtilis (NCBI ptt file)||73, 367|
|CAC2919||CAC2919||Hypothetical protein (NCBI ptt file)||24, 73|
|CAC3019||CAC3019||Sensory transduction protein with GGDEF and EAL domains (NCBI ptt file)||73, 367|
|CAC3175||CAC3175||Hypothetical protein (NCBI ptt file)||73, 292|
|CAC3303||CAC3303||Superfamily II DNA/RNA helicases, SNF2 family (NCBI ptt file)||71, 294|
|CAC3427||CAC3427||PTS system, (possibly glucose-specific) IIA component (NCBI ptt file)||73, 366|
|CAC3628||oppF||Oligopeptide ABC transporter, ATPase component (NCBI ptt file)||270, 294|
|CAC3629||oppD||Oligopeptide ABC transporter, ATPase component (NCBI ptt file)||270, 294|
|CAC3648||CAC3648||Acetyltransferase (with duplicated domains), possibly RIMI-like protein (NCBI ptt file)||73, 363|
|CAC3654||CAC3654||Heavy-metal binding protein (similar to N-terminal domain of MerA) (NCBI ptt file)||73, 320|
|CAC3693||CAC3693||Predicted membrane protein (NCBI ptt file)||146, 294|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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