Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1070(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1070
|Gene||Common Name||Description||Module membership|
|CAC0036||CAC0036||Predicted membrane protein, containing FHA domain (NCBI ptt file)||102, 183|
|CAC0050||CAC0050||Hypothetical protein, CF-3 family K28 (NCBI ptt file)||183, 246|
|CAC0186||CAC0186||Xre family DNA-binding domain and TPR-repeat-containing protein (NCBI ptt file)||68, 183|
|CAC0366||CAC0366||Predicted permease (NCBI ptt file)||113, 282|
|CAC0374||CAC0374||Similar to ABC transporter (permease) (NCBI ptt file)||85, 282|
|CAC0379||CAC0379||Transcriptional regulator, GntR family (NCBI ptt file)||282, 286|
|CAC0508||uvrC||Excinuclease ABC subunit C (NCBI ptt file)||35, 282|
|CAC0522||CAC0522||Predicted hydrolase of the HAD superfamily (NCBI ptt file)||66, 282|
|CAC0576||CAC0576||Hypothetical protein (NCBI ptt file)||115, 183|
|CAC0640||CAC0640||Predicted phoshohydrolase (NCBI ptt file)||282, 298|
|CAC0676||pssA||Phosphatidylserine synthase (NCBI ptt file)||149, 282|
|CAC0799||psd||Phosphatidylserine decarboxylase (NCBI ptt file)||183, 236|
|CAC0800||ubiA||4-hydroxybenzoate octaprenyltranferase related protein (NCBI ptt file)||183, 267|
|CAC0818||CAC0818||Diguanylate cyclase/phosphodiesterase domain (GGDEF) containing protein (NCBI ptt file)||183, 202|
|CAC1011||CAC1011||Uncharacterized small membrane protein, homolog of ykvA B.subtilis (NCBI ptt file)||282, 309|
|CAC1061||CAC1061||Uncharcterized protein, shares conserved domain among different RHS family proteins and WAPA of B.subtilis (NCBI ptt file)||183, 253|
|CAC1070||CAC1070||Transcriptional regulator, AcrR family (NCBI ptt file)||183, 282|
|CAC1407||CAC1407||PTS system, beta-glucosides-specific IIABC component (NCBI ptt file)||282, 359|
|CAC1527||CAC1527||Spore germination protein GerKB (NCBI ptt file)||26, 183|
|CAC1589||malS||Malic enzyme (NCBI ptt file)||92, 183|
|CAC1593||CAC1593||Zn-binding lipoprotein related (surface adhesin A), ADHS (NCBI ptt file)||69, 282|
|CAC1659||CAC1659||Predicted membrane protein (NCBI ptt file)||270, 282|
|CAC1704||CAC1704||Hypothetical protein (NCBI ptt file)||183, 336|
|CAC1777||CAC1777||Nudix (MutT-like) hydrolase (NCBI ptt file)||282, 306|
|CAC1779||CAC1779||Hypothetical protein (NCBI ptt file)||183, 282|
|CAC1781||CAC1781||Predicted nucleotidyltransferase (NCBI ptt file)||282, 306|
|CAC1791||CAC1791||Undecaprenyl pyrophosphate synthase (NCBI ptt file)||282, 345|
|CAC1792||cdsA||CDP-diglyceride synthetase (NCBI ptt file)||282, 352|
|CAC1984||CAC1984||Predicted permease (NCBI ptt file)||176, 183|
|CAC1986||CAC1986||Hypothetical protein (NCBI ptt file)||68, 183|
|CAC2022||moaB||Molybdopterin biosynthesis enzyme, moaB (NCBI ptt file)||209, 282|
|CAC2025||CAC2025||Hypothetical protein (NCBI ptt file)||209, 282|
|CAC2100||CAC2100||Hypothetical protein (NCBI ptt file)||54, 282|
|CAC2104||CAC2104||General secretion pathway protein F (NCBI ptt file)||54, 282|
|CAC2106||CAC2106||Predicted membrane protein (NCBI ptt file)||54, 282|
|CAC2170||CAC2170||Predicted membrane protein (NCBI ptt file)||282, 283|
|CAC2226||CAC2226||Enzyme of ILVE/PABC family (branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase) (NCBI ptt file)||282, 328|
|CAC2292||CAC2292||Predicted membrane protein (NCBI ptt file)||282, 359|
|CAC2410||recX||Uncharacterized protein recX (NCBI ptt file)||282, 283|
|CAC2442||CAC2442||Hemin permease (NCBI ptt file)||85, 282|
|CAC2443||CAC2443||Iron (III) ABC transporter, ATPase component (NCBI ptt file)||183, 282|
|CAC2444||CAC2444||Predicted metal-binding protein (NCBI ptt file)||85, 282|
|CAC2559||CAC2559||Hypothetical protein (NCBI ptt file)||183, 351|
|CAC2753||CAC2753||Possible MDR-type permease, YQJV B.subtilis ortholog (NCBI ptt file)||183, 336|
|CAC2761||CAC2761||Thiamine biosynthesis lipoprotein ApbE (NCBI ptt file)||150, 183|
|CAC3526||CAC3526||FMN-binding protein (NCBI ptt file)||66, 183|
|CAC3573||fabF||3-oxoacyl-(acyl-carrier-protein) synthase I (NCBI ptt file)||68, 183|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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