Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1162(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1162
|Gene||Common Name||Description||Module membership|
|CAC0004||recF||RecF, ABC family ATPase (NCBI ptt file)||26, 272|
|CAC0012||CAC0012||Predicted dehydrogenase with iron-sulfur domain (NCBI ptt file)||86, 328|
|CAC0172||CAC0172||Predicted membrane protein (NCBI ptt file)||123, 328|
|CAC0422||licT||Transcriptional antiterminator licT (NCBI ptt file)||86, 328|
|CAC0568||asd||Aspartate semialdehyde dehydrogenase (gene asd) (NCBI ptt file)||26, 258|
|CAC0803||CAC0803||Hypothetical protein (NCBI ptt file)||328, 367|
|CAC0915||CAC0915||Endoglucanase A precursor (endo-1,4-beta-glucanase) (cellulase A), secreted; dockerin domain (NCBI ptt file)||26, 312|
|CAC1089||CAC1089||Serine kinase/phosphatase HPr (NCBI ptt file)||26, 159|
|CAC1162||CAC1162||Hypothetical protein, CF-11 family (NCBI ptt file)||26, 328|
|CAC1166||CAC1166||Hypothetical protein (NCBI ptt file)||26, 328|
|CAC1228||cisA||Site-specific DNA recombinase (NCBI ptt file)||26, 53|
|CAC1277||CAC1277||Predicted membrane protein (NCBI ptt file)||312, 328|
|CAC1452||CAC1452||MDR-type permease (NCBI ptt file)||26, 53|
|CAC1476||CAC1476||Proline/glycine betaine ABC-type transport system, permease component (NCBI ptt file)||313, 328|
|CAC1484||CAC1484||Nitroreductase family protein (NCBI ptt file)||142, 328|
|CAC1526||CAC1526||Amidase, related to GSP of E.coli (NCBI ptt file)||26, 301|
|CAC1527||CAC1527||Spore germination protein GerKB (NCBI ptt file)||26, 183|
|CAC1530||CAC1530||Sugar-proton symporter (NCBI ptt file)||169, 328|
|CAC1605||arbA||Ketopantoate reductase (NCBI ptt file)||26, 298|
|CAC1844||CAC1844||Hypothetical protein (NCBI ptt file)||26, 123|
|CAC1861||CAC1861||Fragment flavodoxin oxidoreductase (NCBI ptt file)||26, 244|
|CAC2027||CAC2027||Hypothetical protein (NCBI ptt file)||270, 328|
|CAC2056||CAC2056||Hypothetical protein (NCBI ptt file)||26, 359|
|CAC2114||CAC2114||Predicted pseudouridylate synthase, YLYB B.subtilis ortholog (NCBI ptt file)||26, 270|
|CAC2189||CAC2189||Carbamoylphosphate synthase large subunit, short form (NCBI ptt file)||26, 119|
|CAC2224||cheW||Chemotaxis protein CheW (NCBI ptt file)||26, 339|
|CAC2226||CAC2226||Enzyme of ILVE/PABC family (branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase) (NCBI ptt file)||282, 328|
|CAC2284||ruvB||Holliday junction specific DNA helicase, subunit ruvB (NCBI ptt file)||26, 229|
|CAC2333||spsI||DTDP-glucose pyrophosphorylase (NCBI ptt file)||26, 172|
|CAC2489||CAC2489||Predicted membrane protein (NCBI ptt file)||11, 26|
|CAC2585||CAC2585||6-pyruvoyl-tetrahydropterin synthase related domain; conserved membrane protein (NCBI ptt file)||72, 328|
|CAC2655||CAC2655||Uncharacterized membrane-associated protein, DedA family (NCBI ptt file)||26, 359|
|CAC2701||guaB||IMP dehydrogenase (NCBI ptt file)||222, 328|
|CAC2715||CAC2715||Hypothetical protein (NCBI ptt file)||26, 53|
|CAC2743||CAC2743||Predicted permease, YXIO B.subtilis ortholog (NCBI ptt file)||26, 240|
|CAC2762||CAC2762||Polyferredoxin (NCBI ptt file)||26, 150|
|CAC3286||CAC3286||Chey-like receiver domain containing protein, YCBB B.subtilis ortholog (NCBI ptt file)||86, 328|
|CAC3479||CAC3479||Hypothetical protein (NCBI ptt file)||26, 68|
|CAC3554||CAC3554||Siderophore/Surfactin synthetase related protein (NCBI ptt file)||26, 208|
|CAC3609||CAC3609||ABC-type MDR transport system, permease component (NCBI ptt file)||26, 150|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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