Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1428(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1428
|Gene||Common Name||Description||Module membership|
|CAC0023||CAC0023||Transcriptional regulator, LysR family (NCBI ptt file)||179, 266|
|CAC0032||CAC0032||Transcriptional regulator TetR/AcrR family (NCBI ptt file)||1, 179|
|CAC0153||CAC0153||Beta-phosphoglucomutase, putative (NCBI ptt file)||179, 302|
|CAC0180||appF||Oligopeptide ABC transporter, ATP-binding protein (NCBI ptt file)||179, 278|
|CAC0304||motA||Chemotaxis motility protein A, gene motA (NCBI ptt file)||93, 96|
|CAC0305||motB||Chemotaxis motility protein B, gene motB (NCBI ptt file)||93, 96|
|CAC0350||CAC0350||Hypothetical protein (NCBI ptt file)||11, 179|
|CAC0557||CAC0557||Predicted Zn-dependent protease with possible chaperone function (NCBI ptt file)||40, 179|
|CAC1038||CAC1038||Predicted metal-binding membrane protein (NCBI ptt file)||77, 179|
|CAC1077||CAC1077||Putative translation initiation inhibitor (NCBI ptt file)||102, 179|
|CAC1107||CAC1107||Hypothetical protein, CF-36 family (NCBI ptt file)||167, 179|
|CAC1233||chev||Chemotaxis protein CheV ortholog (CheW-like adaptor domain and CheY-like reciever domain) (NCBI ptt file)||93, 285|
|CAC1248||minC||Septum site-determining protein MinC (NCBI ptt file)||167, 179|
|CAC1415||CAC1415||TerC family protein, ortholog of stress responce protein (NCBI ptt file)||34, 93|
|CAC1428||CAC1428||Hypothetical protein (NCBI ptt file)||93, 179|
|CAC1432||CAC1432||Undecaprenyl pyrophosphate synthase related enzyme (NCBI ptt file)||95, 179|
|CAC1550||CAC1550||Methionine sulfoxide reductase C-terminal domain related protein, YPPQ ortholog (NCBI ptt file)||179, 320|
|CAC1600||CAC1600||Methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer) (NCBI ptt file)||93, 299|
|CAC1634||CAC1634||Flagellin (NCBI ptt file)||93, 355|
|CAC1853||CAC1853||Predicted membrane protein (NCBI ptt file)||179, 262|
|CAC2184||CAC2184||Uncharacterized protein, homolog HI1244 from Haemophilus influenzae (NCBI ptt file)||93, 122|
|CAC2185||CAC2185||Uncharacterized protein, homolog HI1244 from Haemophilus influenzae (NCBI ptt file)||52, 93|
|CAC2203||hag||Possible hook-associated protein, flagellin family (NCBI ptt file)||66, 93|
|CAC2278||secD||Preprotein translocase subunits SecD (NCBI ptt file)||8, 179|
|CAC2279||CAC2279||Heme biosynthesis (nirJ-2) family protein (NCBI ptt file)||8, 179|
|CAC2325||CAC2325||Possible cell wall hydrolase containing N-acetylglucosaminidase domain and ChW-repeats (NCBI ptt file)||93, 122|
|CAC2396||CAC2396||Predicted xylanase/chitin deacetylase (NCBI ptt file)||179, 253|
|CAC2491||CAC2491||Predicted acetyltransferase (NCBI ptt file)||179, 312|
|CAC2620||CAC2620||HD-GYP hydrolase domain containing protein (NCBI ptt file)||93, 299|
|CAC2676||CAC2676||Predicted pseudouridylate synthase (NCBI ptt file)||72, 179|
|CAC2773||CAC2773||Transcriptional regulators, AcrR family (NCBI ptt file)||93, 319|
|CAC2896||CAC2896||Uncharacterized protein, YPEB B.subtilis ortholog (NCBI ptt file)||59, 179|
|CAC2898||spoIIR||Stage II sporulation protein R (NCBI ptt file)||24, 179|
|CAC2995||CAC2995||PTS system (Glucose-specific) component IIA (NCBI ptt file)||77, 179|
|CAC3047||CAC3047||Uncharacterized membrane protein, putative virulence factor MviN (NCBI ptt file)||93, 156|
|CAC3496||CAC3496||Predicted transcriptional regulator (NCBI ptt file)||179, 341|
|CAC3556||CAC3556||Probable S-layer protein (NCBI ptt file)||31, 93|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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