Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1038(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1038
|Gene||Common Name||Description||Module membership|
|CAC0023||CAC0023||Transcriptional regulator, LysR family (NCBI ptt file)||179, 266|
|CAC0032||CAC0032||Transcriptional regulator TetR/AcrR family (NCBI ptt file)||1, 179|
|CAC0129||bofA||BofA B.subtilis ortholog, SigmaK-factor processing regulatory protein (NCBI ptt file)||77, 304|
|CAC0153||CAC0153||Beta-phosphoglucomutase, putative (NCBI ptt file)||179, 302|
|CAC0180||appF||Oligopeptide ABC transporter, ATP-binding protein (NCBI ptt file)||179, 278|
|CAC0264||CAC0264||Predicted membrane protein (NCBI ptt file)||77, 147|
|CAC0265||CAC0265||Transcriptional regulator, GntR family (NCBI ptt file)||77, 147|
|CAC0266||CAC0266||ABC transporter, ATP-binding protein (NCBI ptt file)||77, 147|
|CAC0350||CAC0350||Hypothetical protein (NCBI ptt file)||11, 179|
|CAC0557||CAC0557||Predicted Zn-dependent protease with possible chaperone function (NCBI ptt file)||40, 179|
|CAC0850||CAC0850||Nitroreductase family protein (NCBI ptt file)||77, 167|
|CAC0872||CAC0872||Xanthine permease (NCBI ptt file)||77, 303|
|CAC0876||CAC0876||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||77, 348|
|CAC0877||cfa||Cyclopropane fatty acid synthase (NCBI ptt file)||77, 348|
|CAC1006||CAC1006||MutT-like (Nudix) hydrolase (NCBI ptt file)||77, 167|
|CAC1038||CAC1038||Predicted metal-binding membrane protein (NCBI ptt file)||77, 179|
|CAC1077||CAC1077||Putative translation initiation inhibitor (NCBI ptt file)||102, 179|
|CAC1107||CAC1107||Hypothetical protein, CF-36 family (NCBI ptt file)||167, 179|
|CAC1248||minC||Septum site-determining protein MinC (NCBI ptt file)||167, 179|
|CAC1428||CAC1428||Hypothetical protein (NCBI ptt file)||93, 179|
|CAC1432||CAC1432||Undecaprenyl pyrophosphate synthase related enzyme (NCBI ptt file)||95, 179|
|CAC1550||CAC1550||Methionine sulfoxide reductase C-terminal domain related protein, YPPQ ortholog (NCBI ptt file)||179, 320|
|CAC1584||CAC1584||Metal-dependent hydrolase of the beta-lactamase superfamily (NCBI ptt file)||77, 322|
|CAC1832||lexA||SOS regulatory protein LexA (NCBI ptt file)||77, 162|
|CAC1853||CAC1853||Predicted membrane protein (NCBI ptt file)||179, 262|
|CAC2278||secD||Preprotein translocase subunits SecD (NCBI ptt file)||8, 179|
|CAC2279||CAC2279||Heme biosynthesis (nirJ-2) family protein (NCBI ptt file)||8, 179|
|CAC2367||CAC2367||Uncharacterized protein containing predicted cell adhesion domain and ChW-repeats (NCBI ptt file)||77, 296|
|CAC2396||CAC2396||Predicted xylanase/chitin deacetylase (NCBI ptt file)||179, 253|
|CAC2491||CAC2491||Predicted acetyltransferase (NCBI ptt file)||179, 312|
|CAC2676||CAC2676||Predicted pseudouridylate synthase (NCBI ptt file)||72, 179|
|CAC2772||CAC2772||Permease (NCBI ptt file)||77, 262|
|CAC2896||CAC2896||Uncharacterized protein, YPEB B.subtilis ortholog (NCBI ptt file)||59, 179|
|CAC2898||spoIIR||Stage II sporulation protein R (NCBI ptt file)||24, 179|
|CAC2943||CAC2943||N-terminal domain intergin-like repeats and c-terminal - cell wall-associated hydrolase domain (NCBI ptt file)||77, 262|
|CAC2995||CAC2995||PTS system (Glucose-specific) component IIA (NCBI ptt file)||77, 179|
|CAC3013||CAC3013||Hypothetical protein (NCBI ptt file)||77, 147|
|CAC3295||CAC3295||Probable cation efflux pump (multidrug resistance protein) (NCBI ptt file)||77, 348|
|CAC3496||CAC3496||Predicted transcriptional regulator (NCBI ptt file)||179, 341|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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