Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2058(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2058
|Gene||Common Name||Description||Module membership|
|CAC0344||CAC0344||Hypothetical protein (NCBI ptt file)||39, 95|
|CAC0470||spmB||Spore maturation protein B (gene spmB) (NCBI ptt file)||15, 39|
|CAC0601||CAC0601||Unchracterized membrane protein, possible permease (NCBI ptt file)||263, 330|
|CAC0779||CAC0779||Amidase related to nicotinamidase (NCBI ptt file)||39, 62|
|CAC0857||CAC0857||Glucan phosphorylase (NCBI ptt file)||80, 330|
|CAC0863||CAC0863||Sensory transduction histidine kinase (NCBI ptt file)||39, 300|
|CAC1093||CAC1093||Hypothetical secreted protein (NCBI ptt file)||39, 330|
|CAC1252||CAC1252||Possible membrane metalloendopeptidases (NCBI ptt file)||263, 330|
|CAC1270||CAC1270||Hypothetical protein (NCBI ptt file)||39, 203|
|CAC1276||SpoIIP||Stage II sporulation protein P (NCBI ptt file)||39, 330|
|CAC1298||CAC1298||Uncharacterized protein, related to B.subtilis spore coat protein COTS (NCBI ptt file)||203, 330|
|CAC1326||CAC1326||Uncharacterized protein homolog T.maritima (4980675) (NCBI ptt file)||39, 95|
|CAC1402||CAC1402||Unchracterized conserved protein, similar to IcaC of Staphylococcus; YHJR B.subtilis family (NCBI ptt file)||39, 95|
|CAC1466||CAC1466||Hypothetical protein (NCBI ptt file)||39, 236|
|CAC1473||CAC1473||Proline/glycine betaine ABC-type transport system, permease component (NCBI ptt file)||39, 177|
|CAC1508||CAC1508||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC1576||CAC1576||Predicted oxidoreductase, ortholog of GSP39 B.subtilis (NCBI ptt file)||188, 330|
|CAC1689||sigK||DNA-dependent RNA polymerase sigma subunit (NCBI ptt file)||39, 315|
|CAC1765||CAC1765||ATPase, possible competence protein ComM (NCBI ptt file)||39, 245|
|CAC1784||smf||DNA uptake protein (NCBI ptt file)||39, 102|
|CAC1839||CAC1839||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC2058||CAC2058||Predicted membrane protein (NCBI ptt file)||39, 330|
|CAC2300||CAC2300||Uncharacterized secreted protein, YunB B.subtilis homolog (NCBI ptt file)||39, 300|
|CAC2352||CAC2352||Hypothetical protein (NCBI ptt file)||279, 330|
|CAC2353||CAC2353||Hypothetical protein (NCBI ptt file)||279, 330|
|CAC2426||CAC2426||Uncharacterized conserved protein (NCBI ptt file)||263, 330|
|CAC2427||CAC2427||Uncharacterized conserved protein (NCBI ptt file)||263, 330|
|CAC2428||CAC2428||Activator of 2-hydroxyglutaryl-CoA dehydratase (NCBI ptt file)||263, 330|
|CAC2582||CAC2582||Uncharacterized conserved membrane protein, YHGE B.subtilis homolog (NCBI ptt file)||39, 300|
|CAC2666||CAC2666||Hypothetical protein (NCBI ptt file)||300, 330|
|CAC2686||CAC2686||Possible maltodextrin glucosidase (NCBI ptt file)||203, 330|
|CAC2790||CAC2790||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC2794||CAC2794||Transcriptional regulator, Lrp family (possible nitrite reductase regulator NirD) (NCBI ptt file)||300, 330|
|CAC2843||CAC2843||Protein containing aminopeptidase domain (iap family) (NCBI ptt file)||39, 279|
|CAC2899||CAC2899||LysM repeats domain containing membrane protein (NCBI ptt file)||39, 330|
|CAC2903||CAC2903||LysM domain containing membrane protein (NCBI ptt file)||263, 330|
|CAC3015||CAC3015||Glycosyltransferase (NCBI ptt file)||39, 300|
|CAC3080||CAC3080||Hypothetical protein (NCBI ptt file)||39, 41|
|CAC3230||CAC3230||Hydrogenase subunit (ferredoxin) (NCBI ptt file)||174, 330|
|CAC3245||CAC3245||Subtilisin like protease (two fused domains) (NCBI ptt file)||118, 330|
|CAC3278||CAC3278||Uncharacterized protein, containing cell adhesion domain and ChW-repeats (NCBI ptt file)||263, 330|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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