Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2790(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2790
|Gene||Common Name||Description||Module membership|
|CAC0133||CAC0133||Hypothetical protein, CF-4 family (NCBI ptt file)||150, 300|
|CAC0344||CAC0344||Hypothetical protein (NCBI ptt file)||39, 95|
|CAC0470||spmB||Spore maturation protein B (gene spmB) (NCBI ptt file)||15, 39|
|CAC0501||bacA||Bacitracin resistance protein (bacA) (NCBI ptt file)||69, 300|
|CAC0613||CAC0613||Spore coat protein F (NCBI ptt file)||203, 300|
|CAC0614||CAC0614||Spore coat protein F (NCBI ptt file)||203, 300|
|CAC0779||CAC0779||Amidase related to nicotinamidase (NCBI ptt file)||39, 62|
|CAC0810||hypF||Hydrogenase maturation factor (hypF) (NCBI ptt file)||95, 300|
|CAC0863||CAC0863||Sensory transduction histidine kinase (NCBI ptt file)||39, 300|
|CAC1093||CAC1093||Hypothetical secreted protein (NCBI ptt file)||39, 330|
|CAC1270||CAC1270||Hypothetical protein (NCBI ptt file)||39, 203|
|CAC1276||SpoIIP||Stage II sporulation protein P (NCBI ptt file)||39, 330|
|CAC1326||CAC1326||Uncharacterized protein homolog T.maritima (4980675) (NCBI ptt file)||39, 95|
|CAC1402||CAC1402||Unchracterized conserved protein, similar to IcaC of Staphylococcus; YHJR B.subtilis family (NCBI ptt file)||39, 95|
|CAC1423||CAC1423||Predicted dehydrogenase of short-chain alcohol dehydrogenase family, ortholog of YHDF B.subtilis (NCBI ptt file)||118, 300|
|CAC1466||CAC1466||Hypothetical protein (NCBI ptt file)||39, 236|
|CAC1473||CAC1473||Proline/glycine betaine ABC-type transport system, permease component (NCBI ptt file)||39, 177|
|CAC1508||CAC1508||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC1689||sigK||DNA-dependent RNA polymerase sigma subunit (NCBI ptt file)||39, 315|
|CAC1765||CAC1765||ATPase, possible competence protein ComM (NCBI ptt file)||39, 245|
|CAC1784||smf||DNA uptake protein (NCBI ptt file)||39, 102|
|CAC1839||CAC1839||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC1985||CAC1985||Hypothetical protein (NCBI ptt file)||279, 300|
|CAC2058||CAC2058||Predicted membrane protein (NCBI ptt file)||39, 330|
|CAC2249||CAC2249||C-terminal domain of asparagine synthase (NCBI ptt file)||114, 300|
|CAC2300||CAC2300||Uncharacterized secreted protein, YunB B.subtilis homolog (NCBI ptt file)||39, 300|
|CAC2438||CAC2438||Predicted phosphatase (NCBI ptt file)||174, 300|
|CAC2582||CAC2582||Uncharacterized conserved membrane protein, YHGE B.subtilis homolog (NCBI ptt file)||39, 300|
|CAC2583||CAC2583||Uncharacterized conserved membrane protein, YHGE B.subtilis homolog (NCBI ptt file)||150, 300|
|CAC2600||CAC2600||Predicted membrane protein (NCBI ptt file)||300, 301|
|CAC2666||CAC2666||Hypothetical protein (NCBI ptt file)||300, 330|
|CAC2682||CAC2682||Hypothetical protein (NCBI ptt file)||62, 300|
|CAC2683||cotF||Related to spore coat protein F (NCBI ptt file)||62, 300|
|CAC2790||CAC2790||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC2794||CAC2794||Transcriptional regulator, Lrp family (possible nitrite reductase regulator NirD) (NCBI ptt file)||300, 330|
|CAC2796||CAC2796||MoaA/NirJ family Fe-S oxidoreductase (NCBI ptt file)||188, 300|
|CAC2843||CAC2843||Protein containing aminopeptidase domain (iap family) (NCBI ptt file)||39, 279|
|CAC2899||CAC2899||LysM repeats domain containing membrane protein (NCBI ptt file)||39, 330|
|CAC3015||CAC3015||Glycosyltransferase (NCBI ptt file)||39, 300|
|CAC3080||CAC3080||Hypothetical protein (NCBI ptt file)||39, 41|
|CAC3330||CAC3330||Cytochrome P450 family protein, YBDT B.subtilis ortholog (NCBI ptt file)||154, 300|
|CAC3546||CAC3546||Highly conserved protein containing a domain related to cellulase catalitic domain and a thioredoxin domain (NCBI ptt file)||259, 300|
|CAC3674||CAC3674||Two CBS domain containing protein (NCBI ptt file)||114, 300|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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