Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2267(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2267
|Gene||Common Name||Description||Module membership|
|CAC0172||CAC0172||Predicted membrane protein (NCBI ptt file)||123, 328|
|CAC0341||CAC0341||Predicted membrane protein (NCBI ptt file)||111, 144|
|CAC0342||CAC0342||Hypothetical protein (NCBI ptt file)||111, 144|
|CAC0376||CAC0376||N-dimethylarginine dimethylaminohydrolase (similar to ykgA B.subtilis) (NCBI ptt file)||111, 256|
|CAC0453||CAC0453||ABC-transporter, ATP-binding protein (NCBI ptt file)||111, 144|
|CAC0574||CAC0574||Pectate lyase H (FS) (NCBI ptt file)||123, 256|
|CAC0705||CAC0705||Sugar ABC transporter, permease protein (NCBI ptt file)||65, 123|
|CAC0813||CAC0813||Hypothetical protein (NCBI ptt file)||123, 150|
|CAC0911||CAC0911||Possible processive endoglucanase family 48, secreted; CelF ortholog; dockerin domain (NCBI ptt file)||111, 148|
|CAC0912||CAC0912||Possible non-processive endoglucanase family 5, secreted; CelA homolog secreted; dockerin domain (NCBI ptt file)||53, 111|
|CAC0914||CAC0914||Cellulosome integrating cohesin-containing protein, secreted (NCBI ptt file)||111, 161|
|CAC0916||CAC0916||Possible non-processive endoglucanase family 9, secreted; CelG ortholog; dockerin and cellulose-binding domain (NCBI ptt file)||111, 161|
|CAC0917||CAC0917||and cellulose-binding endoglucanase family 9; CelL ortholog; dockerin domain (NCBI ptt file)||111, 161|
|CAC0918||CAC0918||Possible non-processive endoglucanase family 5, ortholog of mannase A, secreted; dockerin domain (NCBI ptt file)||111, 161|
|CAC0926||CAC0926||TPR-repeat-containing protein (NCBI ptt file)||123, 270|
|CAC1199||CAC1199||Hypothetical protein (NCBI ptt file)||86, 123|
|CAC1427||gabT||4-aminobutyrate aminotransferase (PLP-dependent) (NCBI ptt file)||111, 256|
|CAC1446||CAC1446||Hypothetical protein (NCBI ptt file)||123, 270|
|CAC1515||asrC||Anaerobic sulfite reduction protein C, reductase (NCBI ptt file)||111, 240|
|CAC1518||CAC1518||ABC-type transport system, ATPase component (NCBI ptt file)||111, 343|
|CAC1580||CAC1580||Hypothetical protein (NCBI ptt file)||90, 123|
|CAC1644||CAC1644||Hypothetical protein, CF-7 family (NCBI ptt file)||111, 337|
|CAC1650||CAC1650||Hypothetical protein, CF-38 family (NCBI ptt file)||123, 270|
|CAC1709||phoU||Phosphate uptake regulator (NCBI ptt file)||103, 111|
|CAC1774||sacB2||Levansucrase (NCBI ptt file)||111, 161|
|CAC1844||CAC1844||Hypothetical protein (NCBI ptt file)||26, 123|
|CAC1845||motB||Flagellar motor protein MotB (NCBI ptt file)||123, 137|
|CAC1846||motA||Flagellar motor component MotA (NCBI ptt file)||102, 123|
|CAC2251||CAC2251||Uncharacterized conserved membrane protein, affecting LPS biosynthesis (NCBI ptt file)||123, 312|
|CAC2267||CAC2267||Hypothetical protein (NCBI ptt file)||111, 123|
|CAC2339||CAC2339||Uncharacterized protein, YBBK B.subtilis ortholog (NCBI ptt file)||76, 123|
|CAC2586||CAC2586||Predicted membrane protein (NCBI ptt file)||123, 169|
|CAC2636||CAC2636||Predicted GTPase, YSXC B.subtilis ortholog (NCBI ptt file)||102, 123|
|CAC2702||CAC2702||Possible signal transduction protein (containing EAL, CBS and GGDEF domains) (NCBI ptt file)||123, 333|
|CAC2718||CAC2718||Ethanolamine ammonia lyase large subunit (NCBI ptt file)||43, 111|
|CAC2719||CAC2719||Ethanolamin permease (NCBI ptt file)||111, 312|
|CAC2720||CAC2720||Sensory protein containing histidine kinase, PAS anf GAF domains (NCBI ptt file)||102, 123|
|CAC2811||CAC2811||Hypothetical protein, CF-17 family (NCBI ptt file)||123, 258|
|CAC2981||CAC2981||Mannose-1-phosphate guanyltransferase (pyrophosphorylase domain and phosphomannomutase domain) (NCBI ptt file)||118, 123|
|CAC3256||CAC3256||Predicted acetyltransferase (NCBI ptt file)||123, 341|
|CAC3415||CAC3415||ABC-type multidrug/protein/lipid transport system, ATPase component (NCBI ptt file)||123, 208|
|CAC3697||CAC3697||Uncharacterized, Zn-finger domain containing protein, YXKC B.subtilis homolog (NCBI ptt file)||123, 150|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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