Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2364(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2364
|Gene||Common Name||Description||Module membership|
|CAC0220||CAC0220||Hypothetical protein (NCBI ptt file)||49, 261|
|CAC0418||CAC0418||Predicted phosphatase, HAD family (NCBI ptt file)||261, 287|
|CAC0549||CAC0549||Predicted transcriptional regulator (NCBI ptt file)||74, 261|
|CAC0825||CAC0825||Endoglucanase family 5 (NCBI ptt file)||225, 261|
|CAC0871||CAC0871||Hypothetical protein (NCBI ptt file)||157, 261|
|CAC1037||CAC1037||Predicted xylanase/chitin deacetylase (NCBI ptt file)||206, 261|
|CAC1049||CAC1049||Uncharacterized conserved protein,ortholog of YaaR B.subtilis (NCBI ptt file)||117, 158|
|CAC1340||araR||Transcriptional regulator of the LacI family (NCBI ptt file)||259, 261|
|CAC1436||CAC1436||Hypothetical protein (NCBI ptt file)||261, 348|
|CAC1438||CAC1438||Hypothetical protein (NCBI ptt file)||113, 158|
|CAC1439||CAC1439||Uncharacterized conserved protein (NCBI ptt file)||115, 158|
|CAC1440||CAC1440||Hypothetical protein (NCBI ptt file)||115, 158|
|CAC1481||CAC1481||Transcriptional regulator, LysR family (NCBI ptt file)||140, 158|
|CAC1482||CAC1482||Uncharacterized membrane protein,ortholog of YDFK B.subtilis (NCBI ptt file)||158, 346|
|CAC1494||CAC1494||Hypothetical protein, CF-32 family (NCBI ptt file)||157, 261|
|CAC1499||CAC1499||A/G-specific DNA glycosylase (NCBI ptt file)||140, 158|
|CAC1504||CAC1504||MDR-type permease (NCBI ptt file)||140, 158|
|CAC1621||CAC1621||Predicted Fe-S oxidoreductase (NCBI ptt file)||71, 261|
|CAC1622||CAC1622||Pyridoxal kinase related protein (NCBI ptt file)||64, 261|
|CAC1771||CAC1771||Uncharacterized protein, ykrI B.subtilis homolog (NCBI ptt file)||73, 158|
|CAC1948||CAC1948||Hypothetical protein (NCBI ptt file)||117, 261|
|CAC1949||CAC1949||Possible TPR-repeat contaning protein (NCBI ptt file)||117, 261|
|CAC2055||CAC2055||Predicted transcriptional regulator (NCBI ptt file)||158, 345|
|CAC2364||CAC2364||Uncharacterized protein, homolog of gi|2274936 Eubacterium acidaminophilum (NCBI ptt file)||158, 261|
|CAC2418||CAC2418||Uncharacterized conserved membrane protein (NCBI ptt file)||117, 158|
|CAC2429||CAC2429||Predicted membrane protein (NCBI ptt file)||259, 261|
|CAC2472||CAC2472||Alpha/beta superfamily hydrolase (NCBI ptt file)||261, 287|
|CAC2475||CAC2475||Possible 5-Nitroimidazole antibiotics resistance protein, NimA-family (NCBI ptt file)||261, 276|
|CAC2496||CAC2496||Predicted phosphatase of HAD hydrolase superfamily (NCBI ptt file)||158, 261|
|CAC2608||CAC2608||Trancriptional regulator of AraC family (NCBI ptt file)||117, 158|
|CAC2694||CAC2694||Hypothetical protein (NCBI ptt file)||158, 345|
|CAC2832||CAC2832||PLP-dependent aminotransferase (NCBI ptt file)||261, 356|
|CAC2928||CAC2928||Predicted membrane protein (NCBI ptt file)||140, 158|
|CAC2962||CAC2962||Transcriptional regulators of the LacI family (NCBI ptt file)||261, 346|
|CAC2986||ksgA||Dimethyladenosine transferase (NCBI ptt file)||157, 261|
|CAC3279||CAC3279||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||209, 261|
|CAC3387||CAC3387||Pectate lyase (NCBI ptt file)||83, 261|
|CAC3424||CAC3424||Transcriptional regulator, RpiR family (NCBI ptt file)||158, 345|
|CAC3516||CAC3516||Membrane-associated histidine kinase with HAMP domain (NCBI ptt file)||261, 326|
|CAC3519||CAC3519||Predicted membrane protein, possible permease (NCBI ptt file)||158, 207|
|CAC3520||CAC3520||ABC-type transport system, ATPase component (NCBI ptt file)||158, 207|
|CAC3611||CAC3611||Regulatory protein related to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) (NCBI ptt file)||117, 158|
|CAC3614||CAC3614||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3615||CAC3615||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3616||CAC3616||ABC transport system, ATPase component (NCBI ptt file)||115, 158|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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