Organism : Clostridium acetobutylicum | Module List :
Predicted metal-dependent peptidase (NCBI ptt file)
Functional Annotations (5)
|Zn-dependent proteases||cog/ cog|
|metalloendopeptidase activity||go/ molecular_function|
|signal transduction||go/ biological_process|
Regulation information for CAC2628(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2628
Module neighborhood information for CAC2628
|Gene||Common Name||Description||Module membership|
|CAC0423||CAC0423||Fusion: PTS system, beta-glucosides specific IIABC component (NCBI ptt file)||284, 360|
|CAC0425||sacA||Sucrase-6-phosphate hydrolase (gene sacA) (NCBI ptt file)||92, 360|
|CAC0570||CAC0570||PTS enzyme II, ABC component (NCBI ptt file)||237, 360|
|CAC0644||gerKA||Spore germination protein gerKA (NCBI ptt file)||324, 360|
|CAC0766||CAC0766||Predicted transcriptional regulator (MerR family) (NCBI ptt file)||116, 360|
|CAC1396||purD||Phosphoribosylamine-glycine ligase (NCBI ptt file)||249, 360|
|CAC1595||CAC1595||Integrase/recombinase, XerC/XerD family (NCBI ptt file)||249, 360|
|CAC1630||CAC1630||Zn-dependent peptidase from MPP family (NCBI ptt file)||22, 360|
|CAC1761||CAC1761||Predicted GTPase, YLQF B.subtilis ortholog (NCBI ptt file)||116, 360|
|CAC1788||tsf||Translation elongation factor Ts (NCBI ptt file)||237, 310|
|CAC1789||smbA/pyrH||Uridylate kinase (NCBI ptt file)||310, 360|
|CAC1790||frr||Ribosome recycling factor (NCBI ptt file)||310, 315|
|CAC1798||CAC1798||Uncharacterized protein, YhbC family (NCBI ptt file)||213, 310|
|CAC1799||nusA||Transcription terminator NusA (NCBI ptt file)||213, 310|
|CAC1800||CAC1800||Uncharacterized conserved protein, YLXR B.subtilis homolog (NCBI ptt file)||213, 310|
|CAC1801||CAC1801||Possibly nucleic acid binding protein similar to ribosomal protein HS6-type, YLXQ B.subtilis ortholog (NCBI ptt file)||213, 310|
|CAC1803||rfbA||Ribosome-binding factor A (NCBI ptt file)||213, 310|
|CAC1805||truB||Pseudouridine synthase (NCBI ptt file)||213, 310|
|CAC2081||xseB||Exonuclease VII small subunit (NCBI ptt file)||159, 310|
|CAC2083||folD||Tetrahydrofolate dehydrogenase/cyclohydrolase, FolD (NCBI ptt file)||84, 310|
|CAC2372||sspA||Small acid-soluble spore protein (NCBI ptt file)||163, 310|
|CAC2617||CAC2617||Membrane associated methyl-chemotaxis protein, HAMP domain containing (NCBI ptt file)||66, 360|
|CAC2626||fabG||Possible 3-ketoacyl-acyl carrier protein reductase (NCBI ptt file)||310, 360|
|CAC2627||CAC2627||Predicted S-adenosylmethionine-dependent methyltransferase, YtmQ B.subtilis ortholog (NCBI ptt file)||310, 360|
|CAC2628||CAC2628||Predicted metal-dependent peptidase (NCBI ptt file)||310, 360|
|CAC2629||CAC2629||Hypothetical secreted protein (NCBI ptt file)||36, 310|
|CAC2632||CAC2632||Hypothetical protein (NCBI ptt file)||310, 329|
|CAC2650||pyrD||Dihydroorotate dehydrogenase (NCBI ptt file)||116, 360|
|CAC2652||pyrF||Orotidine-5'-phosphate decarboxylase (NCBI ptt file)||116, 360|
|CAC2653||pyrI||Aspartate carbamoyltransferase regulatory subunit (NCBI ptt file)||116, 360|
|CAC2654||CAC2654||Aspartate carbamoyltransferase catalytic subunit (NCBI ptt file)||116, 360|
|CAC2842||CAC2842||Transcription accessory protein TEX, RNA-binding protein containing S1 domain (NCBI ptt file)||105, 310|
|CAC2879||upp||Uracil phosphoribosyltransferase (NCBI ptt file)||28, 310|
|CAC2894||CAC2894||Uncharacterized protein, ywiB B.subtilis homolog (NCBI ptt file)||84, 310|
|CAC2895||ddlA||D-alanine-D-alanine ligase (NCBI ptt file)||310, 329|
|CAC2918||pmi||Mannose-6 phospate isomelase (NCBI ptt file)||270, 360|
|CAC2936||CAC2936||Alpha/beta superfamily hydrolase (NCBI ptt file)||236, 360|
|CAC3095||thiK||Hydroxyethylthiazole kinase ThiM/ThiK (FS!) (NCBI ptt file)||353, 360|
|CAC3332||CAC3332||Predicted amidohydrolase (dihydroorothase family) (NCBI ptt file)||150, 360|
|CAC3356||CAC3356||Lactoylglutathione lyase (LGUL) family protein, diverged (NCBI ptt file)||236, 360|
|CAC3440||CAC3440||Hypothetical protein (NCBI ptt file)||353, 360|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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