Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2693(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2693
|Gene||Common Name||Description||Module membership|
|CAC0085||CAC0085||Hypothetical protein (NCBI ptt file)||60, 99|
|CAC0094||CAC0094||Ferredoxin-nitrite reductase (NCBI ptt file)||27, 276|
|CAC0190||CAC0190||Beta-lactamase (NCBI ptt file)||60, 155|
|CAC0197||CAC0197||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||27, 147|
|CAC0198||CAC0198||Uncharacterized membrane protein, ortholog YYAS B.subtilis (NCBI ptt file)||27, 52|
|CAC0268||CAC0268||ABC transporter ATP-binding protein (NCBI ptt file)||27, 276|
|CAC0269||CAC0269||Uncharacterized membrane protein (NCBI ptt file)||27, 276|
|CAC0548||CAC0548||Predicted metal-dependent hydrolase (NCBI ptt file)||27, 31|
|CAC0634||CAC0634||Predicted membrane protein (NCBI ptt file)||27, 262|
|CAC0853||CAC0853||HD superfamily hydrolase (HD-GYP domain) (NCBI ptt file)||60, 248|
|CAC0986||CAC0986||Lipoprotein, attached to the cytoplasmic membrane, NLPA family (NCBI ptt file)||27, 303|
|CAC1325||CAC1325||Uncharacterized conserved protein, YitT (B.subtilis) family (NCBI ptt file)||27, 31|
|CAC1667||CAC1667||HD family hydrolase, diverged (NCBI ptt file)||27, 262|
|CAC1668||CAC1668||Transcriptional regulator, AcrR family (NCBI ptt file)||27, 262|
|CAC1768||CAC1768||Uncharacterized conserved protein, TraB family (NCBI ptt file)||60, 155|
|CAC2004||CAC2004||Siderophore/Surfactin synthetase related protein (NCBI ptt file)||60, 209|
|CAC2023||CAC2023||Membrane protein, related to copy number protein COP from Clostridium perfringens plasmid pIP404 (GI:116928) (NCBI ptt file)||60, 149|
|CAC2041||CAC2041||ABC transported MDR-type, permease component (NCBI ptt file)||60, 293|
|CAC2042||CAC2042||ABC transported MDR-type, permease component (NCBI ptt file)||60, 155|
|CAC2235||cysK||Cysteine synthase/cystathionine beta-synthase, CysK (NCBI ptt file)||23, 27|
|CAC2260||CAC2260||Spore coat polysaccharide biosynthesis protein, Pyridoxal-dependent enzyme (NCBI ptt file)||27, 52|
|CAC2289||CAC2289||Biotin carboxyl carrier protein (NCBI ptt file)||60, 155|
|CAC2445||CAC2445||AICAR transformylase domain of PurH-like protein (NCBI ptt file)||27, 303|
|CAC2446||CAC2446||Hypothetical protein (NCBI ptt file)||27, 209|
|CAC2514||CAC2514||Beta galactosidase (NCBI ptt file)||60, 155|
|CAC2597||CAC2597||Hypothetical protein (NCBI ptt file)||60, 267|
|CAC2662||CAC2662||Hypothetical protein (NCBI ptt file)||60, 115|
|CAC2693||CAC2693||Predicted membrane protein (NCBI ptt file)||27, 60|
|CAC2695||CAC2695||Diverged Metallo-dependent hydrolase(Zn) of DD-Peptidase family; peptodoglycan-binding domain (NCBI ptt file)||60, 178|
|CAC2782||CAC2782||Predicted permease (NCBI ptt file)||27, 196|
|CAC2783||cysD||O-acetylhomoserine sulfhydrylase (NCBI ptt file)||27, 196|
|CAC2851||CAC2851||GntR/FadR-family transcriptional regulator fused to conserved membrane protein (YHCF B.subtilis homolog) (NCBI ptt file)||60, 149|
|CAC2917||CAC2917||acetyl esterase family enzyme (NCBI ptt file)||27, 286|
|CAC3314||CAC3314||Nitroreductase family protein (NCBI ptt file)||27, 80|
|CAC3411||CAC3411||Homolog of plant auxin-responsive GH3-like protein (NCBI ptt file)||60, 155|
|CAC3460||CAC3460||Hypothetical protein, CF-28 family (NCBI ptt file)||60, 99|
|CAC3646||CAC3646||Predicted transcriptional regulator, containing DNA-binding domain of xre family (NCBI ptt file)||60, 269|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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