Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2662(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2662
|Gene||Common Name||Description||Module membership|
|CAC0085||CAC0085||Hypothetical protein (NCBI ptt file)||60, 99|
|CAC0185||CAC0185||Uncharacterized membrane protein, YBBC B.subtilis ortholog (NCBI ptt file)||115, 314|
|CAC0190||CAC0190||Beta-lactamase (NCBI ptt file)||60, 155|
|CAC0204||srta||Sortase (surface protein transpeptidase), YHCS B.subtilis ortholog (NCBI ptt file)||115, 207|
|CAC0352||CAC0352||Uncharacterized conserved membrane protein, SANA family (NCBI ptt file)||115, 345|
|CAC0576||CAC0576||Hypothetical protein (NCBI ptt file)||115, 183|
|CAC0597||gerKB||Spore germination protein, gerKB (NCBI ptt file)||115, 185|
|CAC0830||CAC0830||Response regulator (NCBI ptt file)||67, 115|
|CAC0833||CAC0833||ABC-type multidrug transport system (daunorubicin resistance), ATPase component (NCBI ptt file)||115, 207|
|CAC0834||CAC0834||Predicted integral membrane protein (NCBI ptt file)||75, 115|
|CAC0835||CAC0835||Predicted integral membrane protein (NCBI ptt file)||115, 207|
|CAC0852||CAC0852||Amino acid permease (NCBI ptt file)||115, 317|
|CAC0853||CAC0853||HD superfamily hydrolase (HD-GYP domain) (NCBI ptt file)||60, 248|
|CAC1439||CAC1439||Uncharacterized conserved protein (NCBI ptt file)||115, 158|
|CAC1440||CAC1440||Hypothetical protein (NCBI ptt file)||115, 158|
|CAC1591||CAC1591||Uncharacterized membrane protein, YCGQ B. subtilis homolog (NCBI ptt file)||113, 115|
|CAC1643||CAC1643||Hypothetical protein, CF-38 family (NCBI ptt file)||115, 140|
|CAC1768||CAC1768||Uncharacterized conserved protein, TraB family (NCBI ptt file)||60, 155|
|CAC2004||CAC2004||Siderophore/Surfactin synthetase related protein (NCBI ptt file)||60, 209|
|CAC2023||CAC2023||Membrane protein, related to copy number protein COP from Clostridium perfringens plasmid pIP404 (GI:116928) (NCBI ptt file)||60, 149|
|CAC2041||CAC2041||ABC transported MDR-type, permease component (NCBI ptt file)||60, 293|
|CAC2042||CAC2042||ABC transported MDR-type, permease component (NCBI ptt file)||60, 155|
|CAC2289||CAC2289||Biotin carboxyl carrier protein (NCBI ptt file)||60, 155|
|CAC2403||CAC2403||Predicted membrane protein (NCBI ptt file)||68, 115|
|CAC2514||CAC2514||Beta galactosidase (NCBI ptt file)||60, 155|
|CAC2597||CAC2597||Hypothetical protein (NCBI ptt file)||60, 267|
|CAC2662||CAC2662||Hypothetical protein (NCBI ptt file)||60, 115|
|CAC2693||CAC2693||Predicted membrane protein (NCBI ptt file)||27, 60|
|CAC2695||CAC2695||Diverged Metallo-dependent hydrolase(Zn) of DD-Peptidase family; peptodoglycan-binding domain (NCBI ptt file)||60, 178|
|CAC2812||CAC2812||Hypothetical protein (NCBI ptt file)||24, 115|
|CAC2851||CAC2851||GntR/FadR-family transcriptional regulator fused to conserved membrane protein (YHCF B.subtilis homolog) (NCBI ptt file)||60, 149|
|CAC3011||CAC3011||Predicted membrane protein (NCBI ptt file)||65, 115|
|CAC3351||CAC3351||Uncharacterized membrane protein, YCBP B.subtilis ortholog (NCBI ptt file)||1, 115|
|CAC3411||CAC3411||Homolog of plant auxin-responsive GH3-like protein (NCBI ptt file)||60, 155|
|CAC3460||CAC3460||Hypothetical protein, CF-28 family (NCBI ptt file)||60, 99|
|CAC3465||CAC3465||Amidase from nicotinamidase family (NCBI ptt file)||115, 283|
|CAC3466||CAC3466||Transcriptional regulator, LysR family (NCBI ptt file)||115, 283|
|CAC3467||CAC3467||Uncharacterized conserved protein, phnB family (NCBI ptt file)||115, 283|
|CAC3613||CAC3613||Hypothetical protein (NCBI ptt file)||115, 293|
|CAC3614||CAC3614||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3615||CAC3615||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3616||CAC3616||ABC transport system, ATPase component (NCBI ptt file)||115, 158|
|CAC3646||CAC3646||Predicted transcriptional regulator, containing DNA-binding domain of xre family (NCBI ptt file)||60, 269|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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