Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC3240(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC3240
|Gene||Common Name||Description||Module membership|
|CAC0075||CAC0075||Ferredoxin (NCBI ptt file)||69, 150|
|CAC0124||CAC0124||Hypothetical protein (NCBI ptt file)||108, 150|
|CAC0133||CAC0133||Hypothetical protein, CF-4 family (NCBI ptt file)||150, 300|
|CAC0135||CAC0135||Hypothetical protein, CF-23 family (NCBI ptt file)||13, 247|
|CAC0206||CAC0206||Uncharacterized conserved membrane protein (NCBI ptt file)||98, 150|
|CAC0248||CAC0248||Transposon related protein (NCBI ptt file)||13, 117|
|CAC0325||CAC0325||Uncharacterized membrane protein, homolog of YtaF B.subtilis (NCBI ptt file)||13, 117|
|CAC0450||CAC0450||Response regulator (CheY-like and HTH domains) (NCBI ptt file)||13, 66|
|CAC0451||CAC0451||Sensory transduction histidine kinase (HAMP, HisKA, HATPase domains) (NCBI ptt file)||13, 140|
|CAC0577||CAC0577||Endo-arabinase related enzyme (family 43 glycosyl hydrolase domain and ricin B-like domain) (NCBI ptt file)||150, 216|
|CAC0589||birA||Biotin-(acetyl-CoA carboxylase)ligase (NCBI ptt file)||13, 140|
|CAC0719||CAC0719||Epoxide hydrolase, similar to eukaryotic (NCBI ptt file)||150, 356|
|CAC0778||CAC0778||ATP-dependent RNA helicase, superfamily II (NCBI ptt file)||13, 66|
|CAC0813||CAC0813||Hypothetical protein (NCBI ptt file)||123, 150|
|CAC0820||CAC0820||Conserved protein, ortholog YwqG B.subtilis (NCBI ptt file)||13, 66|
|CAC0955||CAC0955||ATP-dependent Zn protease (NCBI ptt file)||150, 190|
|CAC1012||CAC1012||Uncharacterized membrane protein, homolog of YNGA/YWCD B.suntilis (NCBI ptt file)||13, 69|
|CAC1332||uxuA||D-mannonate hydrolase (NCBI ptt file)||150, 169|
|CAC1359||CAC1359||Predicted xylanase/chitin deacetylase (NCBI ptt file)||150, 190|
|CAC1371||CAC1371||Possible kinase, diverged (NCBI ptt file)||13, 55|
|CAC1381||cbiJ/cobK||precorrin-6x reductase (NCBI ptt file)||13, 55|
|CAC1458||CAC1458||PTS system, fructose(mannose)-specific IIB (NCBI ptt file)||136, 150|
|CAC1500||CAC1500||Predicted membrane protein (NCBI ptt file)||13, 351|
|CAC1521||CAC1521||Uncharacterized membrane protein, yetF/ydfS/ykjA/yrbG/ydfR B.subtilis ortholog (NCBI ptt file)||150, 208|
|CAC1536||CAC1536||Transcriptional regulator, AcrR family (NCBI ptt file)||150, 165|
|CAC2348||CAC2348||Glycosyltransferase (NCBI ptt file)||13, 312|
|CAC2349||CAC2349||Hypothetical protein (NCBI ptt file)||13, 100|
|CAC2453||CAC2453||CBS domain containing protein (NCBI ptt file)||13, 346|
|CAC2478||CAC2478||Predicted conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase (NCBI ptt file)||13, 149|
|CAC2554||CAC2554||Hypothetical protein (NCBI ptt file)||13, 346|
|CAC2555||CAC2555||Hypothetical protein (NCBI ptt file)||13, 149|
|CAC2583||CAC2583||Uncharacterized conserved membrane protein, YHGE B.subtilis homolog (NCBI ptt file)||150, 300|
|CAC2587||CAC2587||GGDEF domain containing protein (NCBI ptt file)||150, 169|
|CAC2588||CAC2588||Glycosyltransferase (NCBI ptt file)||150, 169|
|CAC2596||CAC2596||Rieske FeS-domain containing oxidoreductase (NCBI ptt file)||65, 150|
|CAC2691||CAC2691||D-lactate dehydrogenase (NCBI ptt file)||150, 338|
|CAC2761||CAC2761||Thiamine biosynthesis lipoprotein ApbE (NCBI ptt file)||150, 183|
|CAC2762||CAC2762||Polyferredoxin (NCBI ptt file)||26, 150|
|CAC2907||CAC2907||Glycosyltransferase (NCBI ptt file)||13, 117|
|CAC3091||CAC3091||Fumarate hydratase, subunit A (N-terminal domain of FumA E.coli) class I (NCBI ptt file)||3, 13|
|CAC3240||CAC3240||Predicted membrane protein (NCBI ptt file)||13, 150|
|CAC3241||CAC3241||Uncharacterized conserved membrane protein, YYAD B.subtilis ortholog (NCBI ptt file)||150, 301|
|CAC3265||CAC3265||Predicted membrane protein (NCBI ptt file)||13, 99|
|CAC3332||CAC3332||Predicted amidohydrolase (dihydroorothase family) (NCBI ptt file)||150, 360|
|CAC3346||CAC3346||MDR-type permease (NCBI ptt file)||4, 150|
|CAC3361||CAC3361||Transcriptional regulator, LysR family (NCBI ptt file)||150, 240|
|CAC3370||CAC3370||Predicted transcriptional regulator (NCBI ptt file)||150, 240|
|CAC3433||CAC3433||Transcriptional regulators, AcrR family (NCBI ptt file)||150, 344|
|CAC3549||CAC3549||Subtilisin-like serine protease (NCBI ptt file)||150, 190|
|CAC3587||CAC3587||DNA replication protein DnaD (NCBI ptt file)||13, 287|
|CAC3596||pgsA||Phosphatidylglycerophosphate synthase (NCBI ptt file)||13, 99|
|CAC3609||CAC3609||ABC-type MDR transport system, permease component (NCBI ptt file)||26, 150|
|CAC3610||CAC3610||ABC-type MDR transport system, permease component (NCBI ptt file)||24, 150|
|CAC3692||CAC3692||Hypothetical protein (NCBI ptt file)||13, 196|
|CAC3697||CAC3697||Uncharacterized, Zn-finger domain containing protein, YXKC B.subtilis homolog (NCBI ptt file)||123, 150|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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