Cre12.g534450.t1.1 SMAD/FHA domain-containing protein | Chlamy Portal

Summary

	Chromosome	Product	Feature Type	Transcript Start	End	Strand	Length
Cre12.g534450.t1.1	chromosome_12	SMAD/FHA domain-containing protein	CDS	5945632	5947741	+	2 109

Phytozome

Locus Genomic View	Functional Annotation
Cre12.g534450.t1.1	Cre12.g534450.t1.1

Product Synonyms

Symbol	Augustus Synonyms	STRING	PAC	Record in ChlamyCyc
	g13144.t1	JGI285394	30791800	Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

	Motif 1	Motif 2	Residual
bicluster_0047	motif_0047_1 motif_0047_1 Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16 e.value: 0.0015 Motif Bicluster: bicluster_0047 Width: 24 Number of Sites: 1 Consensus: tanattgTtaaAtTgaAgcnAAAg Log in to post comments	motif_0047_2 motif_0047_2 Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16 e.value: 0.00019 Motif Bicluster: bicluster_0047 Width: 24 Number of Sites: 1 Consensus: AgcagCAGcAgCAgcAGCaggGgC Log in to post comments	0.18
bicluster_0088	motif_0088_1 motif_0088_1 Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16 e.value: 0.0015 Motif Bicluster: bicluster_0088 Width: 23 Number of Sites: 1 Consensus: CgCCagCaccgCCgCcgCCgcCa Log in to post comments	motif_0088_2 motif_0088_2 Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16 e.value: 2.7 Motif Bicluster: bicluster_0088 Width: 15 Number of Sites: 1 Consensus: TgtgatTgTaTTTna Log in to post comments	0.15

GO Terms

GO:0005515 -

Regulated by

Displaying 1 - 2 of 2

Regulator Locus	Interaction	Weight	Other Influences

Regulates

Interaction	Target Module	Weight
up-regulates	bicluster_0013	0.04
up-regulates	bicluster_0045	0.07
down-regulates	bicluster_0082	0.05
up-regulates	bicluster_0099	0.06
down-regulates	bicluster_0129	0.04
down-regulates	bicluster_0130	0.07
down-regulates	bicluster_0148	0.07
up-regulates	bicluster_0172	0.07

String Network

Link to STRING	STRING Network
JGI285394

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