Organism : Campylobacter jejuni | Module List :
Regulation information for Cj0101(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for Cj0101
Module neighborhood information for Cj0101
|Gene||Common Name||Description||Module membership|
|Cj0030||Cj0030||hypothetical protein Cj0030 (NCBI ptt file)||58, 128|
|Cj0053c||trmU||tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file)||26, 139|
|Cj0082||cydB||cytochrome bd oxidase subunit II (NCBI ptt file)||44, 128|
|Cj0098||fmt||methionyl-tRNA formyltransferase (NCBI ptt file)||58, 128|
|Cj0100||Cj0100||parA family protein (NCBI ptt file)||65, 128|
|Cj0101||Cj0101||parB family protein (NCBI ptt file)||26, 128|
|Cj0251c||Cj0251c||highly acidic protein (NCBI ptt file)||26, 90|
|Cj0263||Cj0263||putative integral membrane protein (NCBI ptt file)||66, 128|
|Cj0273||fabZ||(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase (NCBI ptt file)||26, 146|
|Cj0295||Cj0295||putative acetyltransferase (NCBI ptt file)||23, 26|
|Cj0334||ahpC||alkyl hydroperoxide reductase (NCBI ptt file)||16, 128|
|Cj0443||accA||acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (NCBI ptt file)||14, 26|
|Cj0504c||Cj0504c||hypothetical protein Cj0504c (NCBI ptt file)||48, 128|
|Cj0540||Cj0540||hypothetical protein Cj0540 (NCBI ptt file)||26, 89|
|Cj0586||ligA||DNA ligase (NCBI ptt file)||26, 145|
|Cj0672||Cj0672||putative periplasmic protein (NCBI ptt file)||26, 137|
|Cj0777||Cj0777||putative ATP-dependent DNA helicase (NCBI ptt file)||26, 47|
|Cj0884||rpsO||30S ribosomal protein S15 (NCBI ptt file)||26, 158|
|Cj0886c||ftsK||putative cell division protein (NCBI ptt file)||26, 51|
|Cj0906c||Cj0906c||putative periplasmic protein (NCBI ptt file)||26, 84|
|Cj0954c||Cj0954c||putative dnaJ-like protein (NCBI ptt file)||26, 77|
|Cj0955c||purL||phosphoribosylformylglycinamidine synthase (NCBI ptt file)||19, 26|
|Cj0958c||Cj0958c||putative membrane protein (NCBI ptt file)||26, 47|
|Cj0981c||Cj0981c||transmembrane transport protein (NCBI ptt file)||26, 47|
|Cj0986c||Cj0986c||putative integral membrane protein (NCBI ptt file)||26, 133|
|Cj1013c||Cj1013c||putative membrane protein (NCBI ptt file)||128, 151|
|Cj1014c||livF||branched-chain amino-acid ABC transport system ATP-binding protein (NCBI ptt file)||128, 151|
|Cj1016c||livM||putative branched-chain amino-acid ABC transport system permease protein (NCBI ptt file)||104, 128|
|Cj1017c||livH||branched-chain amino-acid ABC transport system permease protein (NCBI ptt file)||128, 151|
|Cj1019c||livJ||branched-chain amino-acid ABC transport system periplasmic binding protein (NCBI ptt file)||61, 128|
|Cj1033||Cj1033||putative integral membrane component of efflux system (NCBI ptt file)||117, 128|
|Cj1057c||Cj1057c||putative coiled-coil protein (NCBI ptt file)||25, 26|
|Cj1163c||Cj1163c||putative cation transport protein (NCBI ptt file)||51, 128|
|Cj1180c||Cj1180c||putative ABC transporter ATP binding protein (NCBI ptt file)||26, 62|
|Cj1194||Cj1194||possible phosphate permease (NCBI ptt file)||26, 129|
|Cj1208||Cj1208||hypothetical protein Cj1208 (NCBI ptt file)||92, 128|
|Cj1210||Cj1210||putative integral membrane protein (NCBI ptt file)||26, 54|
|Cj1216c||Cj1216c||hypothetical protein Cj1216c (NCBI ptt file)||26, 56|
|Cj1217c||Cj1217c||hypothetical protein Cj1217c (NCBI ptt file)||26, 148|
|Cj1256c||Cj1256c||putative membrane protein (NCBI ptt file)||26, 52|
|Cj1282||mrdB||RodA protein homolog (NCBI ptt file)||26, 141|
|Cj1375||Cj1375||putative efflux protein (NCBI ptt file)||128, 148|
|Cj1385||katA||catalase (NCBI ptt file)||16, 128|
|Cj1437c||Cj1437c||putative aminotransferase (NCBI ptt file)||26, 125|
|Cj1440c||Cj1440c||putative sugar transferase (NCBI ptt file)||128, 141|
|Cj1479c||rpsI||30S ribosomal protein S9 (NCBI ptt file)||111, 128|
|Cj1483c||Cj1483c||putative lipoprotein (NCBI ptt file)||26, 44|
|Cj1533c||Cj1533c||putative helix-turn-helix containsing protein (NCBI ptt file)||109, 128|
|Cj1567c||nuoM||NADH dehydrogenase I chain M (NCBI ptt file)||26, 166|
|Cj1580c||Cj1580c||putative peptide ABC-transport system ATP-binding protein (NCBI ptt file)||56, 128|
|Cj1670c||Cj1670c||putative periplasmic protein (NCBI ptt file)||128, 141|
|Cj1675||fliQ||flagellar biosynthetic protein (NCBI ptt file)||26, 133|
|Cj1688c||secY||preprotein translocase subunit (NCBI ptt file)||128, 151|
|Cj1689c||rplO||50S ribosomal protein L15 (NCBI ptt file)||128, 138|
|Cj1709c||Cj1709c||putative ribosomal pseudouridine synthase (NCBI ptt file)||128, 141|
|Cj1710c||Cj1710c||hypothetical protein Cj1710c (NCBI ptt file)||128, 151|
|Cj1711c||ksgA||putative dimethyladenosine transferase (16S rRNA dimethylase) (NCBI ptt file)||128, 151|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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