PHATRDRAFT_18239 chromatin-specific transcription elongation factor fact 140 kda subunit (COG5406)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_18239 chr_2 chromatin-specific transcription elongation factor fact 140 kda subunit (COG5406) 877918 881537 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0194

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0131
 0.25

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
APP_MetAP superfamily A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as... - 219.525 7.49E-65 197 - 446 superfamily 260321
SPT16 superfamily FACT complex subunit (SPT16/CDC68); Proteins in this family are subunits the FACT complex. The FACT... - 171.271 7.86E-49 555 - 709 superfamily 254945
SPT16 superfamily FACT complex subunit (SPT16/CDC68); Proteins in this family are subunits the FACT complex. The FACT... - 171.271 7.86E-49 555 - 709 superfamily 254945
FACT-Spt16_Nlob superfamily FACT complex subunit SPT16 N-terminal lobe domain; The FACT or facilitator of chromatin... - 129.248 6.07E-34 4 - 185 superfamily 258963
Rtt106 Histone chaperone Rttp106-like; This family includes Rttp106, a histone chaperone involved in... cl17171 91.4421 1.45E-21 837 - 918 specific 254846
PH-like superfamily Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and... - 91.4421 1.45E-21 837 - 918 superfamily 266526
COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and... - 544.607 4.88E-176 1 - 958 multi-dom 227693

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
28217 Not available 186967 216453 Not available Cre12.g540076.t1.1 AT4G10710.1 542963

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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