PHATRDRAFT_20188 elongation factor tu gtp binding domain containing 1 isoform 1 (Ras_like_GTPase superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_20188 chr_8 elongation factor tu gtp binding domain containing 1 isoform 1 (Ras_like_GTPase superfamily) 142282 145638 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0356

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0020
 0.35

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found... cl02787 72.5955 2.60E-15 361 - 446 specific 239671
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 72.5955 2.60E-15 361 - 446 superfamily 261449
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 260.627 9.86E-82 19 - 229 superfamily 266525
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 79.1216 1.08E-17 562 - 628 superfamily 261447
PTZ00416 elongation factor 2; Provisional - 269.996 9.15E-79 15 - 632 multi-dom 240409

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
23179 Not available 207566 194343 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments