23179 PTZ00416
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23179 chr_6 PTZ00416 1282051 1285710 + PTZ00416

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0226

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9618

22728

hypothetical protein
0.9179

11606

hypothetical protein
0.8759

264090

AAA_12
0.8749

20739

hypothetical protein
0.8723

268746

SXM1
0.8708

262625

gatB
0.8685

269893

TOPRIM_DnaG_primases
0.8671

268010

(RPC2) PRK08565
0.8653

263644

(TopoII_2) PLN03128
0.8652

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 293.369 1.88E-91 9 - 242 superfamily 266525
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 84.5144 3.29E-19 978 - 1044 superfamily 261447
EFG_like_IV superfamily Elongation Factor G-like domain IV. This family includes the translational elongation factor termed... - 77.9957 4.00E-16 891 - 964 superfamily 243187
PTZ00416 elongation factor 2; Provisional - 351.658 3.09E-105 5 - 1093 multi-dom 240409

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20188 PHATRDRAFT_20188 207566 194343 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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