PHATRDRAFT_23306 vacuolar protein sorting 13b (VacB)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_23306	chr_22	vacuolar protein sorting 13b (VacB)	547167	550091	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0215

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0063	0.36	810 2000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNB		RNB domain; This domain is the catalytic domain of ribonuclease II.	cl19762	350.059	2.07E-112	492 - 822	specific	250123
RNB superfamily		RNB domain; This domain is the catalytic domain of ribonuclease II.	-	350.059	2.07E-112	492 - 822	superfamily	268115
PIN_SF superfamily		PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a...	-	135.857	3.50E-36	18 - 202	superfamily	265458
VacB		Exoribonuclease R [Transcription]	-	443.756	7.19E-143	288 - 908	multi-dom	223631

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
32744		Not available	207134	218408	451876	Not available	AT2G17510.1	358582

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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