10095 RNase_PH superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10095 chr_15 RNase_PH superfamily 244949 246568 + RNase_PH superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7441977 Thaps10095.1, Thaps10095.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0240

Most Highly Correlated Transcripts

21742

RNase_PH_RRP45
0.9246

267979

HCO3_cotransp superfamily
0.9224

23526

Glo_EDI_BRP_like superfamily
0.9025

10608

PS_pyruv_trans superfamily
0.8969

24790

Nitro_FMN_reductase superfamily
0.8912

268027

Met_10
0.891

bd1807

(bd1807) RRS1 superfamily
0.8904

268443

SAICAR_synt_Sc
0.8892

38472

HA2
0.8888

33759

HECTc
0.8875

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 187.35 4.53E-55 83 - 277 superfamily 261591

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000175 GO:0004534 GO:0016896 -

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0004534

5'-3' exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.
GO Category: 
MF

GO:0016896

exoribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
GO Category: 
MF

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