10414 FAD_binding_7 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10414 chr_16a FAD_binding_7 superfamily 285078 286454 + FAD_binding_7 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442522 Thaps10414.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0017

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0104
 0.31

Most Highly Correlated Transcripts

bd1306

(bd1306) NA
0.9267

bd211

(bd211) Maf_Ham1 superfamily
0.9246

bd1645

(bd1645) tpt
0.9099

bd1820

(bd1820) Fasciclin
0.9026

bd1403

(bd1403) NA
0.9002

bd846

(bd846) NA
0.8951

bd218

(bd218) Chloroa_b-bind superfamily
0.8909

bd1863

(bd1863) NA
0.8906

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8899

bd718

(bd718) PRK10387
0.8813

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 84.9934 9.49E-19 125 - 343 superfamily 251955

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49165 PHATRDRAFT_49165 253064 215426 226719 Cre02.g118000.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003904 GO:0006281 -

GO:0003904

deoxyribodipyrimidine photo-lyase activity

Details: 
Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light.
GO Category: 
MF

GO:0006281

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

Add comment

Log in to post comments