105 PTZ00248
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
105 chr_9 PTZ00248 395794 397050 + PTZ00248

Synonyms

NCBI ID Ensembl Genomes exon ID
7449310 Thaps105.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0287

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0114
 0.48

Most Highly Correlated Transcripts

28570

(L7Ae) Ribosomal_L7Ae superfamily
0.9313

268296

(RM12) Ribosomal_L7_L12
0.9092

268062

PRK14293
0.9089

31929

(GGPS5) Trans_IPPS_HT
0.904

21475

hypothetical protein
0.903

33653

GrpE
0.9002

24410

(RL32) Ribosomal_L32_L32e
0.8998

22240

eRF1
0.8939

39187

(TCP1) TCP1_gamma
0.8909

262414

(Tp_CSF5) CSP_CDS
0.89

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-... cl09927 139.642 5.85E-41 42 - 117 specific 239899
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 139.642 5.85E-41 42 - 117 superfamily 263921
EIF_2_alpha superfamily Eukaryotic translation initiation factor 2 alpha subunit; These proteins share a region of... - 138.431 4.20E-40 153 - 274 superfamily 254274
EIF_2_alpha superfamily Eukaryotic translation initiation factor 2 alpha subunit; These proteins share a region of... - 138.431 4.20E-40 153 - 274 superfamily 254274
PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional - 399.037 1.31E-138 31 - 338 multi-dom 240329

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_34538 PHATRDRAFT_34538 267694 201433 366908 Cre12.g490000.t1.2 AT2G40290.1 356047

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0003723 GO:0003743 GO:0005850 GO:0006412 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005850

eukaryotic translation initiation factor 2 complex

Details: 
Complex of three heterogeneous polypeptide chains, that form a ternary complex with initiator methionyl-tRNA and GTP. This ternary complex binds to free 40S subunit, which subsequently binds the 5' end of mRNA.
GO Category: 
CC

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

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