10566 Na_Ca_ex
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10566 chr_17 Na_Ca_ex 85170 87333 - Na_Ca_ex

Synonyms

NCBI ID Ensembl Genomes exon ID
7453115 Thaps10566.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0348

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0096
 0.39

Most Highly Correlated Transcripts

263610

COG3899
0.8248

21943

Gar1 superfamily
0.8203

267977

MATE_like superfamily
0.8111

33033

YSH1
0.8104

262858

(IKI3) IKI3
0.8093

262079

PP2Cc
0.8007

3118

hypothetical protein
0.7949

34782

HrpA
0.7904

10533

hypothetical protein
0.7894

1255

Nic96 superfamily
0.7837

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 62.2344 2.15E-11 322 - 465 superfamily 250805
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 62.2344 2.15E-11 322 - 465 superfamily 250805

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
35116 Not available 197536 235122 360234 Cre14.g627900.t1.2 AT3G23325.1 259151

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016021 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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