10811 EEP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10811 chr_18 EEP superfamily 182501 184382 - EEP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442937 Thaps10811.1, Thaps10811.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0463

Most Highly Correlated Transcripts

12899

AAA
0.9485

23660

hypothetical protein
0.8807

40929

SrmB
0.8736

bd1662

(bd1662) TIGR00367
0.8713

21165

(Tp_TAF9) TAF9
0.87

bd463

(bd463) Aa_trans superfamily
0.8671

32782

MPN superfamily
0.867

16114

PLN02350
0.8665

13448

Sec1
0.8655

33696

zf-CHY
0.8594

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EEP superfamily Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; This large superfamily includes the... - 402.452 5.16E-136 250 - 583 superfamily 260458
PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional - 318.597 5.60E-100 26 - 575 multi-dom 178689

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42429 PHATRDRAFT_42429 278943 40148 219492 Cre11.g475900.t1.2 AT3G58580.1 359974

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0004518 GO:0016788 GO:0042578 -

GO:0004518

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

GO:0016788

hydrolase activity, acting on ester bonds

Details: 
Catalysis of the hydrolysis of any ester bond.
GO Category: 
MF

GO:0042578

phosphoric ester hydrolase activity

Details: 
Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3.
GO Category: 
MF

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