10976 RluA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10976 chr_18 RluA 607007 608112 - RluA

Synonyms

NCBI ID Ensembl Genomes exon ID
7443018 Thaps10976.2, Thaps10976.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0431

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0035
 0.44

Most Highly Correlated Transcripts

21603

hypothetical protein
0.8611

3071

NA
0.8546

21722

Aldo_ket_red
0.8518

25506

hypothetical protein
0.8509

3167

hypothetical protein
0.8489

22850

DUF4239
0.8459

7032

DUF2358 superfamily
0.8393

20633

Aa_trans superfamily
0.839

10523

hypothetical protein
0.8386

262070

WD40
0.8376

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 127.454 4.68E-35 66 - 307 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 127.454 4.68E-35 66 - 307 superfamily 260207
RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] - 139.368 2.40E-38 51 - 322 multi-dom 223638

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
34773 PHATRDRAFT_48756 PHATRDRAFT_48756 192291 108816 57249 Not available AT1G56345.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0004730 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

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