11077 FG-GAP_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11077 chr_19a_19 FG-GAP_2 65240 72097 + FG-GAP_2

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0234

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0010
 0.38

Most Highly Correlated Transcripts

11084

plant_peroxidase_like
0.7377

31661

Raffinose_syn superfamily
0.729

25634

PseudoU_synth superfamily
0.7229

5894

hypothetical protein
0.7136

7584

pepsin_like
0.7126

bd1792

(bd1792) NA
0.7125

24274

hypothetical protein
0.7048

bd1109

(bd1109) NA
0.6965

1079

hypothetical protein
0.6964

264344

PDEase_I
0.6955

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 60.1849 6.85E-11 640 - 691 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 60.1849 6.85E-11 640 - 691 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 60.1849 6.85E-11 640 - 691 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 60.1849 6.85E-11 640 - 691 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 60.1849 6.85E-11 640 - 691 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 60.1849 6.85E-11 640 - 691 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 60.1849 6.85E-11 640 - 691 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 60.1849 6.85E-11 640 - 691 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 60.1849 6.85E-11 640 - 691 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 60.1849 6.85E-11 640 - 691 superfamily 258488

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007155 GO:0007160 GO:0008305 GO:0004601 GO:0006979 -

GO:0007155

cell adhesion

Details: 
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GO Category: 
BP

GO:0007160

cell-matrix adhesion

Details: 
The binding of a cell to the extracellular matrix via adhesion molecules.
GO Category: 
BP

GO:0008305

integrin complex

Details: 
A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands.
GO Category: 
CC

GO:0004601

peroxidase activity

Details: 
Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
GO Category: 
MF

GO:0006979

response to oxidative stress

Details: 
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
GO Category: 
BP

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