11220 eIF2AThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11220	chr_19a_19	eIF2A	488511	490737	-	eIF2A

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449940	Thaps11220.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0226

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0279	0.39	0.0000044 0.31

Most Highly Correlated Transcripts

32140 DHDPS 0.9006	263424 PLN02551 0.8925	270365 hypothetical protein 0.888	27873 PLN02274 0.8809	42226 PLN03233 0.8798	35164 acolac_lg 0.8784
22293 PLN00178 0.8782	269616 PLN03127 0.8776	bd1515 (bd1515) Adenylsuccinate_lyase_2 0.874	268519 hypothetical protein 0.8721

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
eIF2A		Eukaryotic translation initiation factor eIF2A; This is a family of eukaryotic translation...	-	159.733	4.89E-45	259 - 488	multi-dom	149648

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48306	PHATRDRAFT_48306	261486	283970	52343	Cre08.g375900.t1.1	AT1G73180.2	258933

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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